KEGG   Osmia bicornis bicornis (red mason bee): 114883202
Entry
114883202         CDS       T06109                                 
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
obb  Osmia bicornis bicornis (red mason bee)
Pathway
obb03022  Basal transcription factors
obb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:obb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    114883202
  09124 Replication and repair
   03420 Nucleotide excision repair
    114883202
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:obb03021]
    114883202
   03400 DNA repair and recombination proteins [BR:obb03400]
    114883202
Enzymes [BR:obb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     114883202
Transcription machinery [BR:obb03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     114883202
DNA repair and recombination proteins [BR:obb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     114883202
SSDB
Motif
Pfam: DEAD_2 HBB Helicase_C_2 ResIII DEAD nSTAND3 AAA_11 UvrD-helicase
Other DBs
NCBI-GeneID: 114883202
NCBI-ProteinID: XP_029056599
Position
Unknown
AA seq 759 aa
MKISVDGLLVYFPYDYIYPEQYAYMLELKRGLDAKGHCLLEMPSGTGKTITLLSLIVAYM
LENPLDITKLIYCSRTVPEIEKVIEELKKLMDYYEKEAGNKPKIVGLVLSSRKNMCIHPE
VSREREGKIVDGRCHALTASYIRERHNYDESTPICNFYEGFDMEGKEQMMPPGIYSIDDL
KEYGRDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAESVSKELSKSSVVVFDEAHNID
NVCIDSMSVKINRRILEKSSANIQFLEKTVTEMREDDANKLKEEYERLVEGLKDARVARE
TDIILANPVLPDEVLQEVVPGNIRNAEHFICFLKRFVEYLKTRLRVQHVVQESPAAFLRD
VQAKVSIERKLLRFCAERLGSFLRTMEITDLTDFSPIILVTHLATLVSTYTKGFTIIVEP
FDDKSPTVLNPILHFSCLDSSIAMKPIFDRFQSVVITSGTLSPLDMYPKILNFHPVIMSS
FTMTLARPCLLPMIVGKGNDQVTISSKYETREDVAVIRNYGQLLVEFAATVPDGLVCFFT
SYFYMESVVAAWYDQGVVDQLQRHKLLFIETQDSAETSLALINYIKACENGRGAVLLSVA
RGKVSEGVDFDHHLGRAVLMFGIPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGIMVFADKRFSRIDKRSKLPKWIQEHLTDNLCNLSTEEAVQISKRW
LRQMAQPFTRENQLGLSLLTREQLEKEEYGKIEEQAQQN
NT seq 2280 nt   +upstreamnt  +downstreamnt
atgaaaatcagcgttgatggtttacttgtatattttccgtacgattatatttatccagaa
cagtatgcatatatgctcgagcttaagcgaggcttggatgcaaaaggacactgtttgttg
gaaatgccctcaggcactggcaaaaccataactcttttatcattaattgtagcatatatg
ctggaaaatccattagatattacaaaattaatttattgctctcgtacagtaccagaaata
gaaaaggttatagaagaattaaaaaagcttatggattattatgaaaaagaagcaggaaat
aaaccaaaaattgttgggctggtacttagttcaagaaaaaatatgtgcattcatccagag
gtaagcagagaacgtgaaggtaaaattgtagatggacgctgtcatgctttaacagcatca
tatattcgtgaaagacataattatgatgaatctacaccaatctgtaacttttatgaagga
ttcgatatggaggggaaagaacaaatgatgccaccaggcatatattctattgatgacttg
aaagaatatggtagagatcgtaattggtgtccatattttcttgcaaggtttacaatttta
catgctcaaattgtagtatacagttatcattatttactggatcctaaaattgcagaaagc
gtatcaaaagaattaagcaaaagttctgtagtagtttttgatgaagctcacaacatagat
aatgtatgtattgattcaatgagtgtaaaaataaacagaagaatcttagaaaaaagttct
gctaatatacaatttcttgagaaaacagtgacagagatgagagaagatgatgcaaataaa
ttaaaagaggaatacgaaagattagtagaaggattaaaagacgcgcgagtcgcaagagaa
actgatattatcttggctaatcctgttttaccagatgaagttttacaagaggtagttcct
ggtaacataagaaatgcagaacattttatctgctttttgaaacgatttgttgaatattta
aaaacgcgtttacgtgtacaacacgttgttcaagaatcgcctgctgcatttttacgagat
gttcaagcaaaagtttcaatagaacgtaaacttttacgattttgcgctgaacgattaggt
tcttttttacgtaccatggaaataacagatctaactgatttttcaccaataattttggtg
actcatcttgcaacattagtctctacatataccaaaggatttacgatcatagtagaaccg
tttgatgataaatcgcctacagttttgaatccgattcttcatttcagttgtttagattcg
tcaattgcgatgaaacctatatttgatcggtttcaatcagtagttattacctcaggaaca
ttgtctccattagatatgtatcctaaaattttaaattttcacccggttataatgtcgtct
tttacaatgacattagctagaccatgtcttttacctatgattgtaggaaaaggtaatgat
caagttacaatttcatcaaagtatgaaacaagagaagatgttgctgttataagaaactat
ggccagctattggttgaatttgctgctactgttcctgatggattagtctgtttcttcact
tcttatttttacatggaatctgtagtagctgcatggtacgaccaaggcgtggtggaccaa
cttcagaggcataaattattattcattgaaactcaagattctgccgaaacgagtttagct
ctgataaattatataaaggcttgcgaaaatggaaggggtgctgttcttctttccgtagcg
cgtggaaaagtatcagaaggggttgattttgatcatcatttaggaagagcagttctaatg
ttcgggataccttatgtatatacacaatcacgtattttaaaagcacgattagagtatctt
cgtgatcaatttcaaataagagaaaatgatttcttgacatttgacgcgatgaggcatgcg
gcacaatgtgtcggtagagcaattagaggcaaaactgattatggtattatggtctttgca
gataagagattttcaaggatagataaacgaagtaaattaccaaaatggatacaggaacat
ctaactgataatttatgtaacttgtcaaccgaggaggctgtacagataagtaaacgctgg
ttacgtcaaatggctcagccattcacacgcgaaaatcaattaggattgtcattattgaca
cgagaacagcttgaaaaagaagaatatggtaaaatagaagaacaagcacagcaaaattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (21)   

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