KEGG   Oryza brachyantha (malo sina): 102701847
Entry
102701847         CDS       T02995                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102701847
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:obr03041]
    102701847
Enzymes [BR:obr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     102701847
Spliceosome [BR:obr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    102701847
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    102701847
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N DEAD AAA_22 AAA_19 PWI AAA_30 nSTAND3 SRP54 T2SSE AAA_16 TsaE Flavi_DEAD ABC_tran
Other DBs
NCBI-GeneID: 102701847
NCBI-ProteinID: XP_006659312
UniProt: J3MS81
Position
8:8889921..8901665
AA seq 1052 aa
MASDGQLRDWVSDKLMSLLGYSKSVVVQYVIRLAKECSSTGDLVGKLVEFGFSSSAETRS
FAADIYGKVPRKASGISNYQKQEREAAKLVKKQSTYKLLADEEDNDAETLTSTSRKSSAN
TSSKSRKHFRRKAEDQDDGNDDDANDTTTQDAGRNVRRRTEEVDDEDGDNDTDEEQERIR
DQQERAQLEKNMRERDAANTRKLMERQLSKEEQEEITRRSQAMDNNDTSDLRKFSRQAYL
QKRRDKKIDEIRDEILDHEYIFQDVKLTEAEEKEFRYKKKIYDLVKEHVESADDVAEYKM
PEAYDMGDSVNQEKRFSVAMQRYKDPEARDKMNPFAEQEAWEEHQIGKSKLQFGSKDRKR
SSDDYQYVFEDGIDFVKSSVIEGTQHEEDTDQEDADEKAMLKRELQDERKTLPIYKFRDE
LLKAVEEYQVIVIVGETGSGKTTQIPQYLHEAGYTAKGKVACTQPRRVAAMSVAARVSQE
MGVKLGHEVGYSIRFEDCTSEKTLIKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLS
TDILFGLVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEVHYTKAPE
ADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETIDEILKHRTRGLGTKIAELIICPIY
ANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFCKIKSYNPRTGMES
LLINPISKASANQRAGRSGRTGPGKCFRLYTSYNYMHDLEDNTVPEIQRTNLANVVLTLK
SLGIHDLVNFDFMDPPPSEALLKALEQLFALSALNSRGELTKTGRRMAEFPLDPMLSKMI
VASEKYKCSDEVISIASMLSVGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALLNVYNS
WKETDYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEVSSNASDLDAIKKAITSGF
FHHSARLQKNGSYRTVKNPQTVFIHPSSGLAQVLPRWVIYHELVLTTKEYMRQVTELKPD
WLVEIAPHYYQLKDVDDSGTKKLPKGQGRAAL
NT seq 3159 nt   +upstreamnt  +downstreamnt
atggcgagcgacgggcagctcagggactgggtctccgacaagctcatgtccctcctcggc
tactccaagagcgtcgtcgtgcagtacgtcatcaggctggcgaaggagtgctcttccacc
ggcgacctcgtggggaagctcgtcgaatttgggttctcctcttccgcggagacccggagt
ttcgccgcggacatctacggcaaggttccccggaaggccagcggtatcagcaattaccag
aaacaggaaagagaggcagcaaagcttgtgaagaaacagagcacttacaaactgttggcc
gatgaggaggacaacgatgctgaaaccctcacatcaacgagccgaaagagctccgcgaat
acttcctctaagagtagaaaacattttaggaggaaagcggaagaccaggatgatgggaat
gatgatgatgcaaatgatacaacaacacaggatgcggggaggaatgtgagaagacgaaca
gaagaggtggatgatgaagatggtgataatgacactgatgaagagcaagaaaggataaga
gatcagcaggaaagggctcagctcgaaaagaacatgagagaaagagatgcagccaacact
cgaaagttaatggagcgacaattatctaaggaggaacaagaggagatcaccaggagatct
caggcaatggacaacaatgacacttcagatttgagaaaattttcaaggcaagcttactta
cagaagagaagggacaaaaaaattgatgaaatcagggatgaaattctagatcacgagtac
atttttcaggatgtcaaactaactgaggccgaagaaaaagagttcagatacaaaaagaag
atttatgatcttgtcaaggagcatgttgagagtgcagatgatgttgctgagtacaaaatg
cctgaagcttatgatatgggtgatagtgtcaatcaagaaaagagattctctgtagcaatg
cagcgttacaaagatcctgaggcccgggataaaatgaatccttttgctgaacaggaagca
tgggaagagcaccaaataggaaagtctaaactgcaatttggatcaaaagataggaagcgg
tcttctgatgattatcagtatgtattcgaagatggcattgattttgttaaatcatcagtc
atagaaggaacacagcatgaagaagacacagaccaagaggatgctgatgaaaaagctatg
ttaaaaagggagctccaggatgagcggaaaactcttccaatctataaattcagggatgaa
ctgctcaaggctgttgaagagtatcaggttattgtcatagtgggagaaactggctctggc
aaaacaacacaaatacctcagtatcttcatgaagctggatatacagcaaaaggaaaggtt
gcatgcacacagcctcgtcgagttgcagcaatgagtgttgcagcgagggtgtcccaagag
atgggtgttaaactgggacatgaggttggctactctataaggtttgaggattgcacgtcg
gagaaaacattgattaagtatatgactgatggcatgcttctgagggagtttcttggtgaa
ccagatttggcaagctatagtgttgttatggttgatgaggctcatgagcgtacactgtct
actgatatcttatttggtttggtgaaggatatttcacggtttcggccagatctaaagttg
ctcatttcaagtgcaacccttgacgcagaaaaatttagtgactattttgattcagctcct
attttcaagatacctgggagacgataccctgttgaagttcattatacaaaagctccagaa
gcagattatatagatgcagccattgtcactgttttgcagatacatgtgacacaatcccct
ggtgatatccttgtcttccttacaggacaagaagaaattgaaacaattgatgaaatcctt
aaacatagaacaagaggcttaggcacaaagattgcagaactaattatctgtcctatatat
gcaaatcttcctactgagcttcaagctaagatatttgagcccaccccagagggtgctcgg
aaggttgttctggccactaatatagcagagacttcattgaccattgatggtataaagtat
gtcgttgatccaggcttttgtaagattaagtcatacaacccccgaacaggaatggaatct
ctacttatcaaccctatctcaaaggcatcagcaaaccagagggcaggaagatctggacga
actggaccaggaaaatgcttccgcctgtacacaagttataactatatgcatgaccttgag
gacaatactgttccagaaattcaaagaaccaaccttgcaaatgttgttcttactcttaag
agtcttggtattcatgacttggttaattttgattttatggacccacctccatcagaggct
ctattaaaggccctggaacaactttttgctctcagtgcactcaacagtcgtggagaattg
accaaaactggaagaagaatggcagagtttccattggatcctatgctgtcaaagatgatc
gtagcttcggagaaatacaagtgctctgatgaggtcatctccattgcatccatgttgtca
gttggcaattctatattctatcgtccaaaggacaaacaagtccatgcagacaatgcaagg
ttgaacttccacacaggcaatgttggggatcatatagcgctactcaatgtttacaactca
tggaaagaaacagactattcaacacagtggtgctatgaaaactatatacaggtccgcagc
atgaaaagggcaagagatattcgtgatcaactggaaggacttctagaaagagttgagatt
gaggtttcatcaaatgctagtgacttggatgctattaaaaaggctataacatcaggtttc
ttccatcattctgcacggttgcagaagaatggttcatatagaactgtgaagaatcctcaa
actgtatttatccatcctagttctggattagcacaggtacttcctcggtgggtaatatac
catgaattagtccttacaacaaaagagtatatgcgtcaggtaacagaattgaagcccgac
tggctggtagaaatagcaccacactattatcaactaaaagacgttgatgactctgggacc
aagaagctgcccaagggccaaggacgagctgcattatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (16)   
   Pfam (16)   
All databases (28)   

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