KEGG   Oryza brachyantha (malo sina): 102706357
Entry
102706357         CDS       T02995                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03030  DNA replication
obr03410  Base excision repair
obr03420  Nucleotide excision repair
obr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    102706357
   03410 Base excision repair
    102706357
   03420 Nucleotide excision repair
    102706357
   03430 Mismatch repair
    102706357
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:obr03032]
    102706357
   03036 Chromosome and associated proteins [BR:obr03036]
    102706357
   03400 DNA repair and recombination proteins [BR:obr03400]
    102706357
DNA replication proteins [BR:obr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    102706357
  DNA Replication Termination Factors
   ELG1-RFC complex
    102706357
Chromosome and associated proteins [BR:obr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    102706357
DNA repair and recombination proteins [BR:obr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     102706357
  Check point factors
   HRAD17(Rad24)-RFC complex
    102706357
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_16 AAA_assoc_2 AAA_22 AAA_11 AAA_5 ATPase_2 AAA_30 DUF815 AAA_7 AAA_14 RuvB_N AAA_24 bpMoxR AAA_18 AAA_19 ResIII AAA_3 DNA_pol3_delta nSTAND3 TniB AAA_2 ABC_tran AAA_28 MCM TIP49 SLFN-g3_helicase Mg_chelatase
Other DBs
NCBI-GeneID: 102706357
NCBI-ProteinID: XP_006647989
UniProt: J3LHK5
Position
2:complement(24932979..24937041)
AA seq 362 aa
MAGTTTAATPMDIDAAAPPPGAYAKDKAPLSTTPGGRAAPWVEKYRPQSLGDVAAHRDIV
DTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYGNMILELNASDERGIDVVR
QQIQDFASARSLSFGAKQSVKMVLLDEADAMTKDAQFALRRVIEKHTRSTRFALICNHVN
KIIPALQSRCTRFRFAPLDGTHVRDRLQHIIRSEGLDVDDGGLTALVRLSNGDMRKALNI
LQSTHMASKQITEEAVYLCTGNPMQKDIEQIAFWLLNEPFSTSFKCISDMKMRKGLALVD
IIREVTMFVFKIQMPSDVRIKLINDLADIEYRLCFACNDKLQLGALISTFTGARSAMVAA
AN
NT seq 1089 nt   +upstreamnt  +downstreamnt
atggcgggaaccaccaccgccgccactccgatggacatcgacgccgcggcgccgccgccg
ggggcgtacgcgaaggacaaggcgcccctctccaccacccccggcggcagggcggcgcca
tgggtcgagaagtaccgcccccagtccctcggcgacgtcgccgcgcaccgtgatatcgtc
gataccattgatcggcttacaaatgagaacagacttccacatttgttgctgtatgggcct
cctggtaccgggaaaacatcaacaatactggctgttgcaaggaagttgtatgggtcacag
tatggcaacatgatactcgaactcaatgcatcagatgagcgtggtattgatgttgtaagg
cagcaaatccaagactttgcaagtgcccgcagtctctcttttggagcaaagcaatctgtt
aagatggttctattggatgaagcagatgcaatgaccaaggatgcacagtttgcattgcga
agagttatcgagaagcacacgaggagcacaaggtttgcactgatatgcaaccatgtgaac
aaaataattccagcactgcaatcaaggtgcaccaggtttagatttgcaccccttgatggc
acacatgttagggatcgtcttcaacatataatacgatccgaggggcttgatgtagatgat
ggtggtttgacagcccttgtgcgtctaagtaatggtgacatgaggaaggctttgaacata
ttgcagtcaacacacatggcatcaaagcaaataacagaggaagctgtgtacctttgcaca
ggaaaccccatgcaaaaagacattgaacagatagcattctggttgctgaacgaaccattt
tcaaccagcttcaaatgtatatctgatatgaagatgagaaaaggacttgccttggttgat
atcatacgggaggtcactatgtttgtgttcaaaatacagatgccatctgatgtacgtata
aagctgattaatgatctggccgatatagagtaccggctatgctttgcttgcaatgacaag
ttacagctaggggcgctgatatcaactttcacgggtgctcgctctgctatggttgctgct
gccaactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (31)   
   Pfam (31)   
All databases (47)   

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