KEGG   Oceanobacillus sp. 143: CV093_04305
Entry
CV093_04305       CDS       T06339                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ocb  Oceanobacillus sp. 143
Pathway
ocb03030  DNA replication
ocb03410  Base excision repair
ocb03420  Nucleotide excision repair
ocb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ocb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CV093_04305 (ligA)
   03410 Base excision repair
    CV093_04305 (ligA)
   03420 Nucleotide excision repair
    CV093_04305 (ligA)
   03430 Mismatch repair
    CV093_04305 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ocb03032]
    CV093_04305 (ligA)
   03400 DNA repair and recombination proteins [BR:ocb03400]
    CV093_04305 (ligA)
Enzymes [BR:ocb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CV093_04305 (ligA)
DNA replication proteins [BR:ocb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CV093_04305 (ligA)
DNA repair and recombination proteins [BR:ocb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CV093_04305 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CV093_04305 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     CV093_04305 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CV093_04305 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH RNA_pol_A_CTD BRCT_2 5_3_exonuc zf-NADH-PPase RNA_ligase Integrase_DNA
Other DBs
NCBI-ProteinID: QGS68139
Position
820763..822766
AA seq 667 aa
MDKQQAQDQINALKEVLNQYGYEYYVLDSPSVPDSVYDEKLRELRDLEAEFPEFLTDDSP
TQRIGGAPLDAFKKVQHNIPMMSLGNAFNEEDLRDFVRRASQGTDEPVSFVCELKIDGLA
VSLTYENGKFVRGATRGDGTTGEDITSNLRTIRSIPLSIKLNETLEVRGEAYMPHQSFLS
LNESRLANEEEPFANPRNAAAGSLRQLDPKIAAERNLDVFLYGVGEWNTSTITTHSERLE
KLKELGFKTNSEWKKCSNIEEILEFIEYWTTERPNLSYEIDGIVIKVDNLEQQEALGFTA
KSPRWAIAYKFPAEEAITTLVDIELSVGRTGVITPTAILEPVKIAGSTVGRASLHNEDLI
REQDIRIGDTVVIKKAGDIIPKVVRAVVEKRTGEEKEFEMPNECPACGSEVVRLEGEVAI
RCINPNCPAQLMEGLIHFSSRNAMNIDGLGEKVVIQLFQEKLIHTIADLYRLDREELLRL
ERMGEKSVDNLLRAIETSKENSLEKLLFGLGIRFIGAKAAKTLATEFETMEKLQRATFDE
LVAVDEIGEKMADSVVQYFSEEKVIDLLAELAALNLNMEYKGPKKAEQGSDSIFAGKTVV
LTGKMETYTRNEAKELIESMGGSVTGSVSKKTDILVAGEDAGSKYDKAKKLEITIWDEQQ
LKEAIEG
NT seq 2004 nt   +upstreamnt  +downstreamnt
ttggataaacaacaagcacaagaccaaattaatgcgttgaaagaagttttgaatcaatat
ggctatgaatattatgttctcgatagtcctagtgttccggattcggtttatgatgaaaaa
ttacgtgaactcagggatttagaagctgagtttccagagtttttaacagatgattcaccg
acacaacgaataggtggagctccacttgatgcgtttaagaaagtacaacataatattccg
atgatgagcttagggaatgcttttaatgaagaggatctacgagattttgtacgacgagcc
tctcaaggtactgacgagcccgtaagcttcgtatgtgaacttaaaattgatggacttgct
gtttcattaacttatgaaaatggaaaatttgttcgaggcgcaacacgtggcgacggaaca
acaggagaagatattacttccaatttgcgaacgattcgcagcatcccactatcgataaaa
ttgaatgagacgcttgaagttcgcggagaagcatatatgccgcatcaatcatttctctca
ttaaatgaaagcagacttgccaatgaagaagaaccgtttgcaaatccgagaaatgctgca
gctggcagtctccgtcaattagatccgaagattgccgccgagcgaaatttagatgttttc
ttatatggtgttggtgaatggaatacgagcacgattacaacccatagtgagcgtctagaa
aaactgaaggaacttgggttcaagaccaactctgaatggaagaagtgctcaaatattgaa
gagattcttgaattcattgaatattggacgacagaacgccccaatctttcctatgaaatc
gatggtatcgttattaaagtagataatctggaacaacaggaagcgttaggcttcacagcg
aaaagtccgcgttgggcaattgcatataagtttccagctgaagaggcaattactacacta
gtggacatcgaattaagcgtcggcagaactggggtgattactcctaccgcaattctagag
cctgttaaaattgctgggtcaacggttggacgtgcctccctgcataatgaagatttaatt
cgtgagcaggatattcggattggtgatacggttgtgattaagaaggctggcgacattatc
ccgaaagttgttcgtgcagtagttgagaaacgaactggtgaggaaaaagaattcgaaatg
ccaaatgaatgtccagcatgtggcagcgaggtcgttcgccttgaaggggaagtagcaatc
cgttgtatcaatcctaattgccctgcacaattaatggaaggcctgattcatttctcttct
agaaatgcaatgaatatcgatggattaggcgaaaaagtagtcatccagcttttccaagag
aaattaatccatacaattgctgatttgtaccggttggatcgcgaggagctcctaagacta
gagcgaatgggtgagaagtcggtcgataatttacttcgggcaattgaaacgtcgaaggaa
aactcactagagaagctgctatttggtttaggaatacgcttcattggagcaaaggctgcg
aagacactagcaacggaattcgagacaatggaaaagctgcaacgggcaacatttgatgag
cttgttgcagttgatgaaatcggtgagaaaatggccgattccgttgtacagtatttttca
gaagaaaaagtaattgatctattagctgaattagcagcacttaatcttaatatggaatat
aaaggtccaaaaaaagccgagcaaggtagtgattctatctttgcaggaaagacggttgta
ctaacaggtaagatggaaacgtacactcgtaatgaagcgaaggaattaattgaatcaatg
ggtggatcggttacaggaagtgtaagcaagaagacagatattcttgttgcaggggaagat
gccggttctaagtacgataaagcaaagaaattggaaattacgatttgggatgaacaacag
ctgaaagaagcaatcgaagggtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (14)   
   Pfam (14)   
All databases (32)   

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