KEGG   Oryzias latipes (Japanese medaka): 100682394
Entry
100682394         CDS       T02443                                 
Symbol
col2a1a
Name
(RefSeq) collagen type II A precursor
  KO
K19719  collagen type II alpha
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola04510  Focal adhesion
ola04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:ola00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    100682394 (col2a1a)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    100682394 (col2a1a)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:ola00536]
    100682394 (col2a1a)
Glycosaminoglycan binding proteins [BR:ola00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   100682394 (col2a1a)
SSDB
Motif
Pfam: Collagen COLFI
Other DBs
NCBI-GeneID: 100682394
NCBI-ProteinID: NP_001233588
UniProt: G1UH59
Position
5:10252767..10305223
AA seq 1421 aa
MISFLESRTVLLLVATQLCLLAVVRCQLDDDRVPGIKGQKGEPGDITDVVGPRGPSGPMG
PPGEQGPRGPRGEKGEKGSLGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGGNFAAQMAGG
FDEKAGAAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEPGEPGQSGPMGPRGPPG
PPGKPGDDGEAGKPGKSGERGPSGPQGARGFPGTPGLPGIKGHRGYPGLDGAKGETGAVG
AKGEAGAPGESGAPGPMGPRGLPGERGRPGSTGAAGARGNDGLPGPAGPPGPVGPAGAPG
FPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIPGAKGSAGAPG
IAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIAGFKGEAGPKGEIGPPGLQGAPGPQG
EEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGQKGAPGERGPPGASGAKGATG
DPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPG
PKGATGEPGKSGEKGLLGAPGLRGLPGKDGETGSAGPPGPAGPAGERGEQGQPGPSGFQG
LPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGPAGPQGLQGPRGLPGTPG
TDGPKGAIGPAGSRGAQGPQGLQGMPGERGAAGIPGPKGDRGDLGEKGPEGAAGKDGARG
LTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFAGPPGADGQPG
TKGEQGEPGQKGEAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGATGFPGAAGRVG
PPGPNGNPGPAGPAGPPGKDGPKGVRGDPGPAGRQGDAGLRGPAGAPGEKGDAGEDGPNG
PSGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGPGDRGPPGPVGPPG
LTGPAGEPGREGNPGSDGPPGRDGSAGIKGDRGNTGPVGASGAPGAPGAPGPVGPTGKQG
DRGEPGPQGPAGPSGPAGARGMPGPQGPRGDKGEAGEGGERGQKGHRGFTGLQGLPGPPG
QAGDQGATGPAGPAGQRGPPGPVGPSGRDGANGLPGPIGPPGPRGRGGDSGPAGPPGNPG
PPGPPGPPGPGIDMSAFAGLGQPEKSPDPLRYMRADQAAAGNLRQHDAEVDATIKSLNNQ
IENIRSPEGSKKNPARTCRDLKLCHPDWKSGDYWIDPNQGCTVDAIKVFCNMETGESCVY
PNPSSIPRKNWWSSKSRNKHVWFGETMNGGFHFNYGDDSLAPNTAAIQMNFLRLLSTEAS
QNLTYHCKNSVAYMDASTGNLKKALLLQGSNDVEIRAEGNSRFTYSVMEDSCTEHTGKWG
KTVMEYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGPVCFL
NT seq 4266 nt   +upstreamnt  +downstreamnt
atgattagttttttggaatccaggactgtactgctacttgtagcaacccaactttgttta
ttagccgttgtgagatgtcagctggatgacgaccgagtacctggaattaagggccagaag
ggtgagcctggtgacattactgatgttgtaggaccaagaggaccatctggcccaatgggc
ccaccaggagagcaaggcccccgcggaccaagaggagagaaaggagagaagggaagtctt
ggtcctcgaggcagagatggtgaacctggcacccctggaaaccctggaccccctggacct
ccaggaccaaacggaccccctggccttggtggaaactttgctgctcagatggcgggcggt
ttcgatgagaaagctggcgcagcacaaatgggagtgatgcaaggaccaatgggccctatg
ggacccagaggaccacctggccccacaggatcacctggcccacagggtttccaaggcaac
ccaggagaaccaggagaacccggacaatctggccccatgggtccccgtggccctcctgga
ccacccggaaaacccggtgatgacggtgaagctgggaaaccaggtaaatcaggagagcgt
ggaccttctgggccacagggagctcgagggttcccaggaactccaggtttgcctggcatc
aaaggacacagaggttatccaggtcttgatggtgcaaagggagagactggtgctgttggt
gccaaaggagaggctggtgctcctggagagagtggtgcacctggaccaatgggacctcgt
ggtttgcctggcgagagaggccgtcctggatccactggagctgctggtgcacgtggaaat
gatggcttgcccggccccgccggtccaccaggtcctgttggtccagctggagctccaggc
ttccccggttcccctggttccaaaggagaagctgggccaacaggtgcccgcggacctgag
ggagcacaagggccccgtggagagtccggtactcctggatcacctggaccctccggtgct
tctgggaaccctggaactgatggtattcctggagctaaaggatcagctggggctcctggt
atcgctggtgctcctggtttccctggtcctcgtgggcctccagggcctcaaggagcaact
ggacctcttgggccaaaaggaacatctggagatccaggaattgcaggatttaagggagaa
gctggacctaaaggggaaattggacccccaggtcttcaaggagctcctggcccccaagga
gaggaaggcaaaagaggacccaggggtgagcctggtgctgctggaccactgggacctcct
ggagagagaggagctcctggtaacagaggtttccctggtcaagacggtcttgctggacag
aagggagccccaggtgagcgcggtcctcctggagccagtggagccaagggggctaccggt
gaccctggccgtcctggagagtctggactacctggcgccagaggtctgactggtcgccca
ggtgatgctggaccacaaggcaaagttggaccatcaggagctccgggtgaggatggtcgt
cccggacctcctggtcctcaaggagcccgcggacagccaggtgtcatgggattccccgga
ccaaagggagcgaccggcgaacctgggaagtctggtgagaaaggacttcttggagccccc
ggtctgagaggtctgcctggaaaagatggagaaacggggtctgctggaccacctggcccg
gctggtcctgcaggggagagaggggagcaaggacagcctggtccgtcgggcttccagggt
ctgcctggacccccgggcccccctggagagggaggcaagcctggtgatcagggtgttcct
ggagaagccggagctgctggtgccacaggacccagaggagagcgtgggttccctggagag
agaggtcctgctggccctcaaggtctgcagggacccagaggtctacctggaactcctgga
actgatgggcccaagggagcaattggccccgctggttctcgcggagctcaaggaccccag
ggcctgcagggaatgcctggagaaagaggagctgctggtattcctggacccaaaggagac
agaggagatttaggagagaaaggtcctgaaggtgctgccggcaaagatggtgccagaggt
ctaactggtcccattggtcctcctggtcctgggggtccaaatggagaaaagggtgaatct
ggtcctgctggtccttctggggctcctggtacacgtggtgctcccggagacagaggagag
accggacctcctggacctgctggttttgctggacctcctggtgctgatggccaacctgga
accaagggagagcagggagaaccagggcagaagggagaggctggcgcacctggaccccaa
ggaccatctggtgcaccaggacctgcaggacctactggtgtttctggacctaaaggcgct
cggggtgctcagggaccccctggagccactggtttccctggagctgctggacgagtagga
cctcctggtccaaatggcaatcccggacctgctggtcctgctggccctcctggtaaagat
ggacccaagggtgtgagaggagaccctggacctgcaggaaggcaaggcgatgctggactt
cgtggtcctgctggggctcctggagagaaaggagatgccggagaggatggtcctaatggc
ccttcaggtccctcgggtcctcaaggactggctggtcagcgcggtattgttggtctgcca
ggacagcgaggtgaaaggggtttcccaggtttacctggaccttctggtgagcctggaaag
cagggagctcctggaggtccaggagaccgtggacctcctggacccgttggaccacctgga
cttacaggacctgctggagaacctggtagagagggcaaccctggatctgatggaccacct
ggcagagatggatctgctggaatcaagggtgatcggggtaacaccggccctgtaggtgcc
tctggcgccccgggggctccaggggctccaggccctgtgggtcccactggcaaacaagga
gacagaggagagccaggcccgcaaggacctgctggaccttcaggacctgcaggagctaga
ggaatgcctggaccacaaggacctcgtggtgacaagggtgaggctggagaaggcggtgag
agggggcaaaagggacacagaggtttcactggtctgcaaggtctccctggacctccaggt
caagctggagaccagggagcaactggacctgctgggcctgctggacaaagaggaccacct
ggacctgtgggcccctctggtagagatggcgcaaatggtctaccaggaccaattggacct
cctggaccacgtggtcgcggtggagactccggtccggctggtcctcctggaaatccagga
ccccctggtcctccaggtcccccaggccctggcattgacatgtctgcgtttgctggtctg
ggtcagcctgagaaatcacccgatcctctccggtacatgagggccgaccaggctgctgct
ggaaacctccgtcagcacgatgctgaggtcgacgctacaatcaaatctcttaacaatcag
attgagaacatccgcagccctgaggggtccaagaagaaccctgcccgcacctgcagagat
ctgaagctctgtcatcctgactggaagagcggtgattactggattgatcctaaccaagga
tgcacggtagatgcaatcaaagtcttctgcaacatggagacaggggagtcctgtgtctac
cccaacccctccagcattcctcgcaagaactggtggtcaagcaagagcagaaacaaacat
gtctggtttggagagacgatgaatggaggattccacttcaactatggcgatgacagcttg
gcacccaacactgctgccattcaaatgaatttcctgaggctgctgtccaccgaggcttct
cagaacctcacgtaccactgtaagaacagcgtggcatacatggatgcctcaacaggcaac
ttaaagaaggccttgctgctgcaaggttccaatgatgtggagatcagagctgagggcaac
agccgctttacttacagcgtcatggaagacagctgcacggaacacacaggtaaatggggc
aagacagtgatggaatacaggtcgcagaagacctcacgtttgcccattgtggacattgcc
cccatggatattggtggagcggaccaggagtttggcgtcgacgtgggaccggtctgcttc
ttgtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (68)   
   KEGG ORTHOLOGY (1)   
   RefGene (64)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (84)   

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