KEGG   Oryzias latipes (Japanese medaka): 101165709
Entry
101165709         CDS       T02443                                 
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12 isoform X1
  KO
K18409  ATP-dependent RNA helicase TDRD12 [EC:5.6.2.5]
Organism
ola  Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:ola00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ola03036]
    101165709 (tdrd12)
Enzymes [BR:ola01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.5  RNA 5'-3' helicase
     101165709 (tdrd12)
Chromosome and associated proteins [BR:ola03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    101165709 (tdrd12)
SSDB
Motif
Pfam: TUDOR DEAD CS Helicase_C
Other DBs
NCBI-GeneID: 101165709
NCBI-ProteinID: XP_004086289
Position
6:5364816..5445913
AA seq 1392 aa
MPKIFIQKIESPSCLWCRVIQDPGIDAETAELYSKLQAQMNLFYNDLTKDRSRLSPTSFE
EEEVYVVYWEESKSWCRAVVKSITVDSVTFLACCFLVDYGERIVVSSDKIRLIVPDFLQL
PFWAQKFHLSGIKPTTLRVPFLEEKAELIPSNQWDISATVYLHSLLKASVLVEAVLLESE
SDSTAIELYLSTGDFKICVNDELVSKKFAYYSEESGRGGLDAWGRIPIKFCSVLTQIDSA
SLNKLEAVKPPPMSVKPQQPLEVEAEGLETAFPQEELHKDGSNLEGLKRELSSNSKSRSS
TEACSAESGSSEEADSCLSASLGRSLDLFRFLKHLNHDNKTQHALTGVGLDEELNMCRPI
QKKNCSSLRTELKPSLQDGAETVCSTEGENPAEEEEEGKPVESGRPEARRTFCGRKDLAS
TRFLEWLNPGPFNPDREDSDEVAPRCDPCLSGVLVHSFLPVEGCSSLEDAPINDSLRRVL
LKKRYCSLSAADCYSWPAVAQGNSTVIISHSSDQPLSFLAPLLSHVLQNSLYTARMSSSG
PMGLLLCPGWERVQMVFSMLEETRVSESLRPATALLGVGKDEAKNFKLPKNCRMLVTTPF
TAVRLLSCHCRLFQRLYHLVLDEADQLFARAPDQMTTILQHFHKVTTGEEKALFPQQLVC
VAKRWSPHMEAMVAAYMPYPSIVITIPEEAGLYGNVQQLILMTVESMKIQALLGVLDFSP
LSCQKTLIIANSAQDVEYIYEAVSSKSAFCLKTHEDLTHQFTSVAQQWSKVTGPGSPLIL
VTTDECLKCLGITDATCVIHYEFPTAPKGFGRRLFCMFKNFRNLSQQTQSSSCAARSVLL
ISEKNSRHIIGVMRYLRRTDALLPPELLAFERGVLKARDEQKTSRPLCSYLKSFGVCRDS
SVCPDRHTFSPQLDRSALPAAGIIEVLPLFIKSASVFGGRLIRKEDREFDEMVSGMASYY
SDKKPEARELQEGGLYAVQEDDTFHRVKILSLPKNGKSQFFCVYVRFIDVGREKEVKSYQ
MLKLPESFHSLPEQAVEIIVCGVKPADAETDWHPKVIRTISQKIRGLQHRARAVLSVGNT
VFVDPMVRVTQVPGMKTLINEYNIQSEILKTGMGIRNPDHLVLLKALCQNEKACSHTEEV
PPSGLGDMLPCWNVKTTAENGELREPSNSVESANESLVQIPAAPDVPLVSAHGDKSLFDR
SSFSAEHIERLVSASISNGRENSPAGNPLLCENGEGEDGSSTYQVVDSGLTDCKSSAKSF
HPQVCWYQTSQCVMVTVRLMNPENQCCDFFPDRVTYSGTVDGRIFRTCLELQHRIAVDRC
SWEMKSHQPVLKLVKEEQGHWDRLVRVKNIFVTYDTEHLDDEEDEASDGQRFRANTGQED
VYVNSESGSESD
NT seq 4179 nt   +upstreamnt  +downstreamnt
atgccaaaaattttcatccaaaagattgagagtccttcctgcctctggtgtcgagtgatt
caagatcctggtatcgacgcagagacggcagaactttattccaagctccaggctcaaatg
aacctattctacaatgacctgacaaaggaccggtcaagactgagccccacttcgtttgag
gaagaggaggtgtatgttgtgtactgggaggagagcaagtcttggtgtcgtgctgtggtg
aagtccatcacggtggattcagtgacctttctagcctgctgcttcctggtcgactatgga
gaaagaattgtggtttcttcagacaagatccggctgatagttcctgactttctgcagctg
cccttctgggcgcagaagttccacctgtctggaatcaaaccaacaacactgcgagtccct
tttctggaagagaaggcagagctcattccttccaatcagtgggacatctctgccacagtc
taccttcacagtctcctcaaagcttccgtcctcgtggaggctgtactgttggaaagtgag
tcagactcaacagcaatagagctctatctgtccactggggacttcaagatctgtgtcaat
gatgagttggtgtccaagaagtttgcatattacagtgaagagtctggaagaggtggtctg
gatgcatggggcagaattcctatcaaattctgctctgtcttaacccagattgactcagca
tctctcaacaagctggaggctgttaaacctccaccgatgtccgtaaaaccacagcagcct
ttggaagtggaagcagagggtctggagacagctttcccacaggaggagctgcataaagat
ggcagtaacttggaaggcctgaagagggagctgtcatcaaacagcaaatccaggagcagc
acagaagcttgttctgcagagagtggttcatcggaggaagcagactcttgtttgtctgcg
tctttgggtagaagcctggatctttttaggttcctgaagcatctaaatcatgacaacaaa
acacagcatgctcttaccggggtgggtcttgatgaagaattaaacatgtgtcgacccatc
cagaagaaaaactgctcatctttgcggacagaactgaaacccagtctgcaggatggagct
gaaactgtttgcagcactgaaggtgaaaatccagcagaagaggaggaagagggtaaacca
gtagagtctggacggccagaagcaagaaggaccttttgcggtcgaaaagacttggcgagc
acccgctttttggagtggctcaaccccggaccctttaatccagatcgagaagattcagac
gaagtggccccccgctgtgatccgtgcctgagtggggttctggtgcactcattcctcccc
gtagaagggtgcagtagtctggaagatgcccccatcaatgattctctccgtcgggtgctg
ctaaagaaacgctactgcagcctgtcggcagctgactgctacagctggcctgctgtggcc
caggggaatagcactgtgatcatctcccatagctctgaccagccactcagtttcctcgcc
cccctcctaagccacgtcctgcagaactctttgtacaccgcccgcatgtcaagctcaggg
cccatgggactgctgctctgtcccggctgggagagggtccagatggtgttcagtatgctg
gaagagacaagggtttctgaaagccttcgtccggctaccgccctgctgggggtgggcaaa
gatgaagccaaaaattttaaacttcccaaaaactgccgtatgttggtgaccacgccgttc
acagcagtacgtctgctgtcctgccactgccgcctcttccagcggctataccacttggtg
cttgacgaggccgatcagctcttcgctcgtgctcctgatcagatgacaaccatcttgcag
cacttccacaaagtgactaccggtgaggagaaagccctttttccccagcagctggtttgc
gtggctaaaaggtggagcccccacatggaggctatggtggctgcttacatgccgtacccc
agcatcgtcataaccatccctgaagaagctggtctctatggaaacgttcaacagctcatc
ctcatgactgtggagagcatgaagatccaagcgctgttgggggttttggacttcagcccc
ctcagctgccagaagactttgatcatagcaaactctgctcaggatgtagaatacatttat
gaggctgtgagcagcaagtctgcattctgtctgaagacccacgaggacctaactcaccag
ttcacctccgtggctcagcagtggagcaaagttacgggacctggttctcccctcattcta
gtgaccactgatgagtgcctgaagtgtcttggtatcacagacgcaacatgtgtcattcat
tatgaatttcccacggcacccaaagggtttgggagaagactcttctgcatgttcaaaaat
ttcaggaacctttctcaacaaacgcagagctcctcctgtgctgcgcgctcagtgctgctg
atctcagagaagaactctcgccacatcatcggtgttatgcgatacctcagacggaccgat
gccctgcttcccccagagctgctggcctttgaacggggagtcctgaaggcccgggatgag
cagaaaaccagccgtcctctctgtagctacctaaagagctttggagtgtgcagagacagc
agtgtgtgtcctgatcggcacacattctcaccccagctggatcgctctgcactccctgct
gctggaatcatagaagttcttcctctcttcataaagtctgcatcagtgttcggaggccgt
ttaatcaggaaggaggacagagagtttgatgaaatggtttctggcatggcttcttattat
agtgacaagaaaccagaagccagagagctgcaggaaggaggtttatatgctgttcaggag
gatgacaccttccacagggtgaagatcctctctttacccaaaaatggcaagagtcagttc
ttctgcgtctatgtccggttcatcgatgtaggcagagaaaaggaagtcaagtcctaccag
atgttaaagctgccggagtcctttcattctctgcccgaacaggccgtggagatcatcgtg
tgcggcgtgaagcccgcggatgcggagacagactggcacccaaaggtcatcagaaccatc
agtcagaagatccggggtctgcagcatcgggccagagcagttctgagtgtggggaacact
gtttttgttgatccaatggtccgtgttacccaggtgccaggcatgaaaactctcatcaat
gagtacaacatccagtctgagatcctgaaaacgggaatggggatcagaaatccagatcat
ctggtccttctgaaggcattatgccaaaacgaaaaggcttgcagtcacacagaagaagtt
cccccatcagggcttggggatatgctgccatgttggaatgtcaaaaccacagcagagaac
ggagaattaagggaaccaagtaactctgtggagtcagcaaacgagtccttagtccagatt
cccgcagctcctgatgtacctctggtctcagctcatggtgacaagtcactgtttgacaga
tccagcttttctgctgagcacatagaaagattggtgtctgcaagcatcagtaatggacga
gaaaacagtcctgcaggcaacccactcctttgtgaaaacggtgaaggtgaggatggaagc
tccacttaccaggttgttgacagcggcctgacagactgtaaaagctctgcaaagagcttc
cacccacaggtatgttggtaccagacatcccagtgtgtgatggtaaccgtgagactgatg
aatccagagaatcagtgctgcgatttctttcctgacagagtgacctacagtggcacggtg
gacggccggatcttcagaacctgcctggagctgcagcacagaattgcagttgacaggtgc
tcatgggaaatgaagtcccatcagccggttctcaagctggtgaaggaggagcagggacac
tgggacagactggtcagggtgaagaacatttttgtgacctacgacacggagcaccttgac
gatgaagaggatgaggcgtcagacggacagcggttcagagcaaacacaggacaggaggac
gtctacgtgaactctgagagcggcagtgagagcgactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (64)   
   KEGG ORTHOLOGY (1)   
   RefGene (60)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (4)   
   Pfam (4)   
All databases (79)   

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