KEGG   Oreochromis niloticus (Nile tilapia): 100692493
Entry
100692493         CDS       T06104                                 
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
  KO
K17890  autophagy-related protein 16-1
Organism
onl  Oreochromis niloticus (Nile tilapia)
Pathway
onl04136  Autophagy - other
onl04140  Autophagy - animal
onl04621  NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:onl00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    100692493 (atg16l1)
   04136 Autophagy - other
    100692493 (atg16l1)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    100692493 (atg16l1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:onl04131]
    100692493 (atg16l1)
   03029 Mitochondrial biogenesis [BR:onl03029]
    100692493 (atg16l1)
Membrane trafficking [BR:onl04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    100692493 (atg16l1)
 Others
  Specific organelles associated proteins
   Auto phagosome
    100692493 (atg16l1)
Mitochondrial biogenesis [BR:onl03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    100692493 (atg16l1)
SSDB
Motif
Pfam: WD40 ATG16 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd Beta-prop_DCAF4 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_EIPR1 NBCH_WD40 Beta-prop_IFT122_1st eIF2A WD40_RFWD3 Beta-prop_IFT140_1st PUMA_CC Beta-prop_SPT8 Beta-prop_HPS5 HALZ Beta-prop_DCAF12 KASH_CCD EXOC6_Sec15_N NET2A DUF1664
Other DBs
NCBI-GeneID: 100692493
NCBI-ProteinID: XP_005462785
Ensembl: ENSONIG00000017239
Position
LG14:39691299..39703127
AA seq 605 aa
MAERRGECLWKKHVAEQLKLRDREQRQAFEEIILQYNRLLEKADLQAVLSERYQADKYDV
QRGHESSAADSSRSDALQQEMAQMRIRHQEELTELHKKRGELAQSVIELNNQIQQKDREI
QNNEAKMLEYQQQISSLEGDCRELRSCLQDLERANQTLKDEYDALQITFSALEEKLRKTT
EDNQELVSRWMAEKAQEANRLNAENEKDSRRRQAKLQKELADAAKEPLPIEADDDIEVLT
EDAGKAGGETSPSRLLTRTPSKKISQQPPGGLLDSISLMFGRRRSANSFSTSPESSEAPS
GVCTEVRVPTTALHVFEAHDGEVNAVRFSPGSRLLATGGMDRRVKLWEVVAGRCEPKGAL
TGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSARFLLDNAR
IVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGHFDKKVRFWDIRAESIV
RELELFGRVTSLDLNHDRTELLTCSRDDLVKIVDLRTNAVKQTLSAQGFKCGADWTRVTF
SPDGSYVAGGSADGALYIWNVLTGKVDRTLDRNHSSAINSVSWSPSGAYVASVEKGSRAI
LWSDM
NT seq 1818 nt   +upstreamnt  +downstreamnt
atggcggagcggcgaggcgagtgtttgtggaagaaacacgtggcggagcaactgaagctt
agagaccgagagcagagacaggccttcgaggagatcatcctgcagtataaccgtctcctg
gagaaggcggacctgcaggccgtcctatcagagcgttaccaggccgacaaatatgacgtc
cagagaggccacgagtccagtgcggcagactcgagtcgcagcgacgccctgcagcaggag
atggctcagatgaggattcggcaccaggaggagctgacggagctgcacaagaaacgagga
gagctggctcagagcgtgatcgaactgaacaaccagatccaacagaaggaccgagagatc
cagaacaacgaggccaagatgcttgagtaccagcagcagatctccagcctggagggcgac
tgccgcgagctcaggagctgcttgcaggacctggagagggcgaatcagacgctgaaggac
gagtatgacgccctgcagatcaccttctccgccctggaggagaagctgaggaagaccacc
gaggacaaccaggagctggtgtcccgctggatggccgagaaggctcaggaggcgaaccgg
ctgaacgccgagaacgagaaggacagcagacggcggcaggccaaactgcagaaggagctc
gccgacgctgccaaggaaccgctgcccattgaggcggacgacgacatcgaagtgctgact
gaggacgccgggaaggcaggaggggagacgtcgccgagccggctgcttaccaggactccc
agtaagaagatctcccagcagcctccaggggggctgcttgactctatctccctcatgttt
ggcaggcgtcggagcgccaactctttcagcacttcaccggagagcagcgaggccccgtca
ggcgtctgcacggaggtccgcgtgcccaccacagcgctgcacgtctttgaagcccacgac
ggcgaggtgaacgctgtgaggttcagccctggctcccgtctcctagcaacaggagggatg
gaccgcagggtgaagctgtgggaggtggtggcaggtcgctgtgagcccaaaggagctctg
accggcagcaacgcgggaatcaccagcattgagttcgacagtgctggctcctacctgctc
gccgcctccaacgacttcgccagccggatttggaccgtggatgactacagactgaggcac
acgctgacgggtcacagcgggaaagtcctctctgctcgcttcctgttggacaacgctcgc
atcgtctctggaagctacgaccgcacgctcaaactgtgggaccttcgcagcaaagtctgt
atgaagacggtgttcgcgggctccagctgcaacgacatcgtgtgcaccgagcaatgcgtc
atgagcggacattttgacaaaaaggttcgcttctgggacatcagagcggagagcatcgtg
cgggagctggagctgttcggcagagtgacgtctctggatctgaaccacgatcgcaccgag
ctgctcacctgctccagagacgacctggtgaagatcgtcgacctgcgcaccaacgccgtg
aagcagacgctcagtgcgcagggtttcaagtgtggagctgattggaccagagtgaccttc
agtcctgacgggagctacgtggccggcggatcagctgacggcgctctgtacatctggaac
gtgctgacggggaaagtggaccgaactctagaccggaaccacagctcagccatcaactcg
gtgtcctggtcgccttcgggagcatacgtggcaagcgtggagaaaggcagtcgcgccatc
ttgtggtcagacatgtga

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (11)   
   RefSeq(nuc) (5)   
   GenBank (3)   
   EMBL (3)   
Protein domain (36)   
   Pfam (36)   
All databases (54)   

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