KEGG   Oreochromis niloticus (Nile tilapia): 100700747
Entry
100700747         CDS       T06104                                 
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
onl  Oreochromis niloticus (Nile tilapia)
Pathway
onl04510  Focal adhesion
onl04512  ECM-receptor interaction
onl04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:onl00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    100700747
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    100700747
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    100700747
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:onl04147]
    100700747
   00536 Glycosaminoglycan binding proteins [BR:onl00536]
    100700747
Exosome [BR:onl04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   100700747
Glycosaminoglycan binding proteins [BR:onl00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   100700747
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 100700747
NCBI-ProteinID: XP_019211752
Position
LG14:complement(40464276..40494246)
AA seq 1589 aa
MGFPGPQGPPGEKGQRGDEGPTGAAGLKGHMGSLGVPGFPGLDGVPGHPGPAGGPGRPGL
DGCNGTRGDKGKAGLPGEQGRDGELGFPGPKGYPGDQAVYFIRYPGVTGDAGPSGCPGLQ
GEQGFSGSKGATGSPGPKGQDGVPGSPGSRGSPGERGRSLPGQKGDEGDQGLQGRPGPFE
YVDPPEDLYIKGDKGSRGVKGVCGIDGLPGLDGPPGMEGEKGILGLPGPRGLPGQPGLRG
NKGVKGIQGSSGLPGLIGRKGPKGKRGDPGPPGVLRVADITYTGRVGDPGSPGPHGLNGD
RGRMGIPGAPGLPGRSILGLRGVVGQKGVPGCKGVRGDPGQISTEKPTPGEPGKPGRPGF
RGPKGQQGVPGTYCLPGASGPPGDPGVSGPTGFQGSLGIKGSCGGCSCGVPLVLRGAPGP
MGDLGFPGFQGSPGPTGPRGEYGVPGDTGETGEQGRAGFPGFKGFKGQKGDLTVEDIEGE
KGNKGQQGPAGRQGFPGRRGQTGPPGVPGNPGFQGESFSSFPGERGLRGTTGLKGYLGPP
GPRGQGADGAVGKHGLPGDPGPTGSCGPPGLKGVKGDPPPFRPIRPGGPGEKGDLGSAGY
AGSQGPPGFPGGIGSDGPKGDNGKDGLPGIPGKQGPQGVTGDYGDEGPEGFSYDGDPGSP
GLRGSAGLRGPTGDSAVGLPGSIGFPGTRGPQGPKGVPGNPGQHGLPGISGLHGCRGAKG
QKGDDGAPGITGCPGPTSNRCDPGKPGTMGQSGFRGSTGAQGISGDKGEIGNVGSEGIGP
KGSVGASGLPGVRGKPGGQGLPGLSGSSGLQGTGGPKGLTGPWGWEGVPGNPGKPGVPGD
LGRTGERGFNGRDGGQGIEGPKGQKGFQGPTGPPGPTNYILIKGKRGNPGHPSTVGFTGP
RGSKGMQGAAGKPGHPGCDGPPGIVGPPGPPGPCGKQGPVGPPGLKGFEGYCGFPGNVGD
PGDKGCTGKPGEPGSPGCKGPKGNKGESIGCPGPNGERGPRGDKGHLGPPGSPGDLGGLG
FTGAPGEKGCRGEKGHCGSIGPRGVIGPPGPRGQPGTPGIQGKCGGDGPPGHEGCRGLKG
PPGPLGLHGLDGLKGEKGAIGTRGRGFPGVKGSLGPPGDKGPPGHQGLCGTSQPGPPGYK
GPFGPKGPPGKCGPPGKPGPDCKTPIKGPCGDPGCPGPDGEPGNLGEIGDPGQNPPIRGD
IGDNGNVGCQGPKGPRGCPGHIGTQGCTGYPGQKGMRGDTGLLGIPGPRGCKGVPGHCGS
PGLPGPPGVHGPKGEKGDTLDPALISPPKGPPGETGSTGQFGHPGLNGEQGPCGPKGDKG
DYGPQGCKGCDGPPGLKGDKGEPGLPGESGVVGQKGNRGPEGEKGSHGPTKELNLGLLVV
HSQSANTPRCPGNMNTLWEGFSLLYLEGQERAHTQDLGQPGSCMRVFSTLPFAPCNKHTC
SYASRNDKSYWLTTMEPVPREHVSGVNIKKYISRCVVCEAPSLPIAVHSQSSQSVECPEN
WTELWDGYSFVMHTGAGDEGGGQPLTSSGSCLKAYKAQPFVECQGPRGTCHFFANMYSFW
LTTLTDPAMLTNDQEQRRSIAKCKVCMRL
NT seq 4770 nt   +upstreamnt  +downstreamnt
atgggcttcccgggtcctcaggggcctccaggagagaaaggccagagaggagatgagggg
ccaacaggagctgcaggcctgaaaggacatatgggatctcttggtgttcctggttttcca
ggtttggatggagttccgggacacccgggacctgctggaggtccaggacgtccaggtctg
gatggatgtaatggaactagaggagacaaggggaaagctggccttccgggagaacaagga
cgtgacggagaactgggttttccaggaccgaaaggatatccaggagatcaggcggtgtac
ttcatacgttaccctggagtgactggagatgctgggcccagtggatgtcctggtctgcag
ggtgagcagggcttctcgggatcgaagggagcaacgggttctccaggaccgaaaggccaa
gacggtgtacctggaagcccgggttctcgaggttcacccggggaaagaggtcgatctcta
cctggacagaaaggagacgagggggatcagggtttgcagggacgtccagggccgtttgag
tatgttgaccctcccgaagacctctacatcaaaggagacaaaggctcccggggagttaaa
ggagtctgtggaattgacggactgccgggtctggatgggccacctgggatggaaggggag
aaggggattttggggcttcctggaccaaggggactccctggacaacctggtctccgtggg
aacaaaggagttaagggaatccaaggaagctcaggactcccaggtctgattggacgaaag
ggtcctaagggcaaaaggggagatcccgggcctccaggcgtcctccgggtggcagacatc
acgtacaccggtcgagttggagatcccgggtcacccggcccgcacggccttaatggagac
agaggacggatgggaatacctggcgccccaggactgcctggcagatcaatactcggactg
cggggagttgtaggtcagaagggagttccaggatgcaagggggtcagaggagatccaggt
cagatctctacagagaaacccacacctggagaacctggaaaaccagggcgccctggattc
aggggacctaaaggacagcaaggtgttccaggtacctactgtctccctggagcctcagga
ccacctggggacccaggtgtgtcagggcccacagggtttcagggctcactgggaattaaa
ggtagttgtggtggctgttcttgtggcgttcctcttgtactaagaggtgcacctggccct
atgggtgacttgggatttccagggttccaaggatcccccggacccacaggtcctcgggga
gagtacggtgttcccggagacacaggagagactggtgagcagggtcgggccggattcccg
ggtttcaaaggctttaaaggacagaaaggagatttaacggtggaggatattgaaggtgag
aagggaaacaagggacagcagggccctgcaggcagacaagggttcccaggaagaagagga
cagactgggcccccaggggtccctggaaatcccggtttccagggtgagagtttttccagt
ttccctggagaaaggggcctcagaggaactacagggttaaagggatatttaggacctcca
ggtccccgaggacaaggtgcagatggagctgtgggaaaacatggactccctggggatcca
ggacctactggatcctgtggccccccggggttaaagggggttaaaggtgaccctccaccc
tttagacccataagacctggtggccccggagagaagggagaccttggaagtgcaggctac
gcaggttcccagggtcctccaggttttcctggtggcattgggtcagatgggcctaaagga
gacaatggaaaggatggacttcctggaatacctgggaaacaaggacctcagggtgtcact
ggagattatggagatgaaggacctgaaggcttcagttatgatggagatccaggctctccg
ggacttcgaggctctgcaggtctcaggggaccaacaggagactctgctgttgggctccca
ggctctattggctttccagggacacggggccctcaaggacccaaaggagtgcctggcaac
cctggccaacatggtctaccaggcatcagtggtctccatggatgtcgtggagcaaagggt
cagaaaggagatgatggagccccgggtataactggctgcccaggacccacatcgaaccga
tgtgatccaggaaaacctggtacaatgggccagtcgggctttcgaggatctactggagcc
caaggtatttctggggataaaggggagatcggcaacgttggttctgaaggaattggcccc
aaaggctctgtgggtgcatcaggacttccaggtgtccgtggaaagcctggtggtcagggc
ctcccaggactcagtggaagctcaggacttcagggcactggtggtccaaaaggtctgact
ggaccctggggctgggagggagtgcctgggaaccctggaaagccgggggtccccggagat
ctgggcaggactggagagagagggttcaatggacgagatggtggtcaaggaatcgaaggg
ccaaaaggacagaaaggctttcaaggtccaacaggccctccaggaccaaccaactacatc
ctcattaaaggaaagagaggaaacccaggacatccctccactgttggatttactggacct
cgaggaagcaaaggtatgcagggagcagcaggcaagccagggcatccagggtgcgacgga
cccccgggcattgtaggaccccccgggccccctggaccctgtggcaaacaaggccctgtg
ggacccccaggactgaaggggtttgaaggatactgtggctttcccggaaacgttggagat
ccaggtgacaaaggatgcacagggaaacctggtgagcccggttccccaggatgtaaaggt
cccaaaggtaataaaggggagtctattggttgccctggtccaaatggagaaagggggcct
cgtggagacaagggacacctaggacctcctggatctcctggagatctgggagggttgggt
tttactggggctccaggagagaaaggatgcagaggagagaagggacactgtggaagcatc
ggtcctagaggtgtgattgggcccccaggtcccaggggtcaaccaggtactccaggtatt
caaggtaaatgtgggggtgatggtcctccaggacacgaaggctgccgaggacttaaaggc
cctcctggaccgctgggacttcatggactggacggactgaaaggagagaagggggccatt
gggaccagaggtcggggctttccaggtgtcaaaggttccttgggtccaccaggagataaa
ggccctccaggacatcaaggtctttgcggtacatctcaacctggaccaccaggatacaaa
ggccccttcggacccaaagggcctccaggtaaatgtggacctccaggtaaacctggacca
gactgcaaaactcctatcaaagggccctgtggagatcctggctgtccaggcccagatgga
gagccagggaatcttggtgagataggggatcctggtcaaaaccccccaattcgtggggat
attggggacaatggtaacgtgggatgccaagggccaaagggaccaagaggatgcccagga
catataggaacacaaggttgcaccggatacccaggacaaaaaggtatgagaggcgatact
ggtttgttgggaatacctggccctcgaggttgtaagggtgttcctggtcactgtggatct
ccaggacttcctggacctcctggagttcatggaccaaaaggggaaaagggtgacacctta
gatcctgcactcatatcacctccaaagggtcctcctggagaaactggctcaactggtcaa
tttggacatcctggcctgaatggagaacaaggcccatgtggtcctaaaggtgataaagga
gattatggacctcagggatgtaaaggctgtgatggaccccctggtctaaaaggagacaaa
ggagagccaggcctgccaggagagagtggagtagtgggacagaaaggtaaccgtggtcca
gaaggtgaaaagggttctcacggaccaaccaaagaattgaacttgggcttgttggtggtg
cacagtcaaagtgcaaacactcccaggtgtccaggcaacatgaacaccctgtgggaagga
ttcagtctgctgtatctggaaggccaggagcgggcacacacccaggacttgggtcagccg
gggtcgtgcatgcgtgtcttttccaccttgcccttcgctccatgtaacaagcatacttgc
tcttacgccagtcgtaatgataaatcctattggctaacgacgatggagcctgtcccacgt
gaacacgtgagtggagtcaacatcaaaaagtacatcagccgctgcgtggtgtgtgaagcc
ccatccctacccatcgcagtacacagccagtccagtcagtctgtggagtgtcccgaaaac
tggacagaactgtgggacggatactccttcgtcatgcataccggtgcaggtgatgaaggt
ggcggccagcctctgacatcatcaggtagctgtctgaaagcatacaaggcccagccattc
gtggagtgtcaggggcctcgtggaacctgccacttcttcgccaacatgtacagtttctgg
ctgaccaccctgaccgacccggcgatgctgaccaatgaccaagagcagaggaggagcatt
gcaaagtgcaaagtctgcatgaggctgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (22)   

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