KEGG   Orcinus orca (killer whale): 101271574
Entry
101271574         CDS       T05247                                 
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
  KO
K08737  DNA mismatch repair protein MSH6
Organism
oor  Orcinus orca (killer whale)
Pathway
oor01524  Platinum drug resistance
oor03430  Mismatch repair
oor05200  Pathways in cancer
oor05210  Colorectal cancer
Brite
KEGG Orthology (KO) [BR:oor00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    101271574 (MSH6)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    101271574 (MSH6)
  09162 Cancer: specific types
   05210 Colorectal cancer
    101271574 (MSH6)
  09176 Drug resistance: antineoplastic
   01524 Platinum drug resistance
    101271574 (MSH6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oor03400]
    101271574 (MSH6)
DNA repair and recombination proteins [BR:oor03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     101271574 (MSH6)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I PWWP MutS_IV MutS_II MUM1-like_PWWP WPP
Other DBs
NCBI-GeneID: 101271574
NCBI-ProteinID: XP_004265021
Position
13:complement(52639466..52657354)
AA seq 1361 aa
MSRQSTLYSFFPKSPALNNASKDPVRASSESAAAAATGASPPSPGGDAAWSDAGPGPGPL
AGSTSRAEARNLNGGLRKSAAPAVPASSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTF
IREKGKSARVHVQFFDDSPTRGWVSRRLLKPYTGSKSKEAQKGGHFYSSKPEILRAMQRA
DEALNKDKIKRLELAVCDEPSEPEEEEETEAGATYASDKSEEENEIESEEEVRPKVQGSR
RSSRQIKKRRVISDSESDIGGSDVEFKPDAKEEGSSDEISSGVGDSDSEGLDSPVKVAPK
RKRMITGNGSLKRKSSRKEMPSATKRATGISSETKNTLSAFSAPQNSESQAHVSGGCDDS
SRPTIWYHETLEWLKEEKRRDKHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQ
NFDLVIFYKVGKFYELYHMDALTGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYK
VARVEQTETPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPSENYSKYL
LSLKEKEEDSSGHARVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKG
NLSVETKMILKGSLSSSLQEGLIPGSQFWDAAKTLRTLLEEGYFTDKLNEDSGVMLPQVL
KGMTSESDSVGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVRA
TGPGAVFAKASQRMVLDAVTLNNLEIFLNGTNGSTEGTLLDKIDTCYTPFGKRLLKQWLC
APLCNPYVISDRLDAIEDLMVVPDKISEVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPD
SRAIMYEETTYSKKKIIDFLSALEGFKVLCKIIGVMEEVIDDFKSKILKQVLTLQAKNPE
GRFPDLTLELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQR
SRIGCRTIVYWGIGRNRYQLEIPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLANLI
NAEERRDVSLKDCMRRLFYNFDKNYKDWQAAVECIAVLDVLLCLANYSRGGDGPMCRPVI
LLPGEDTPPFLDLKGSRHPCITKTFFGDDFIPNDILIGCEEEEENGKAYCVLVTGPNMGG
KSTLMRQAGLLVVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETAS
ILKHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQN
VAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRK
AREFEKMTQSLRLFREVCLASESSTVDAEAVRKLLTLIEEL
NT seq 4086 nt   +upstreamnt  +downstreamnt
atgtcgcgacaaagcacgctgtacagcttcttccccaagtctccagccctgaataatgcc
agcaaagacccggtcagggcctcaagtgaaagcgccgccgccgctgccaccggggcctct
cccccttccccaggcggggatgcggcctggagcgacgccgggcctgggccggggcccctg
gcgggctccacttcgcgggccgaggcgaggaacctcaacggaggcctgcggaagtcggca
gcccctgcggtccccgccagttcttgtgacttctcaccaggtgatttggtttgggccaag
atggagggttacccttggtggccttgcctggtttacaaccacccttttgatggaacattc
atccgtgagaaaggaaagtctgcccgagttcatgtacagttttttgatgacagcccaacg
aggggctgggttagcagaaggctattaaagccatatacaggttcgaagtcaaaggaagcc
cagaaagggggtcatttctacagttcaaagcctgaaattctcagagcaatgcaacgtgca
gatgaagccttgaataaagacaagattaagaggcttgaattggcagtgtgtgatgagccc
tcagaaccagaggaggaagaagagacggaggcaggtgccacttacgcatcagataagagt
gaagaagaaaatgaaattgagagtgaagaggaagtgaggccaaaggtgcaaggatctagg
cgaagtagccgccagataaaaaagcgaagggtcatatcagactctgagagtgacattggt
ggctctgatgtggaatttaagccagatgctaaggaggaaggaagcagtgatgaaataagc
agtggagtaggggatagtgacagtgaaggcctggacagccctgttaaagttgctccaaag
aggaagagaatgataactggtaatggctccctcaaaaggaaaagttcaaggaaggaaatg
ccctcggccaccaaacgagcaactggcatttcatcagaaaccaagaatactttgagtgct
ttctctgcccctcaaaattcggaatcccaagcccacgttagtggaggatgtgatgacagt
agtcgccctaccatctggtatcatgaaactttagagtggcttaaggaggagaagagaaga
gataagcacaggaggcgacctgatcaccctgattttgatgcatccacactctatgtgcct
gaggatttccttaattcctgtactcctgggatgagaaagtggtggcagattaagtctcag
aactttgatcttgtcatattttataaggtggggaagttttatgagctataccacatggat
gctcttactggagtcagtgaactagggctggtattcatgaaaggcaactgggcccattct
ggtttccctgaaattgcatttggccgatattcagattccctggtccagaagggctataaa
gtagcacgggtggaacagaccgagaccccggaaatgatggaggcacgatgccgaaagatg
gcacatatatctaagtatgacagagtggtgaggagggagatctgtagggtcattaccaag
ggtacacagacctacagtgtgctggaaggtgacccctcagagaactacagtaaatacctt
cttagcctcaaagaaaaagaagaagattcttctggccacgctcgagtgtatggagtatgt
tttgttgatacctcgctagggaagttcttcataggtcagttttcagatgatcgccattgt
tccaggtttaggacgttagtggcacactatcctccagtacaagtcttgtttgagaaagga
aatctctcagtggaaactaagatgattctcaagggttcattgtcctcttctctccaggaa
ggtctgataccaggttcccagttttgggatgcagccaaaactttgagaactctccttgaa
gaaggatattttacggacaagttaaatgaggacagtggggtgatgttaccccaggtgctt
aaaggtatgacctcagagtctgattctgttgggttgacaccgggagagaagagtgaattg
gccctctctgctcttggtggttgtgtcttctacctcaaaaaatgccttattgatcaggag
cttctatcaatggctaattttgaagaatatattcccttggattctgacacggtccgtgct
accggacctggtgctgtctttgctaaagccagtcaacgaatggtgctagatgctgtgaca
ttaaacaacttggagatttttctgaatggaacaaatggttctactgaagggaccctgtta
gacaagattgatacttgctatactcccttcggtaagcggctcctaaagcaatggctttgt
gccccactctgtaacccttatgttatcagtgatcgtctagatgccatagaagacctaatg
gttgtgcctgacaaaatctctgaggttgtagaccttctaaagaagcttccagaccttgag
aggctcctgagtaaaattcataatgttggctctcccctgaagagccagaaccacccagat
agcagggctataatgtatgaagaaaccacatacagcaaaaaaaagattattgattttctt
tctgctctggaaggattcaaagtactatgtaaaattataggggttatggaggaagtcatt
gatgactttaagtctaaaatccttaagcaggtccttactctgcaggcaaaaaatcctgaa
ggccgctttcctgatttgactttagaactaaaccgatgggatacagcctttgaccatgaa
aaggctcgaaagactggactgattactcccaaggcaggatttgactctgattatgatcaa
gctcttgctgacataagagaaaatgaacagagcctcctggaatacttggagaaacagcgt
agtagaattggctgtaggaccatagtctactggggaattggtaggaatcgttaccagttg
gaaattcccgagaatttcatcacccgtaatttgccagaagaatatgagttgaaatctacc
aagaagggctgtaaacgatactggaccaaaacaattgagaaaaagttggctaatctgata
aatgctgaagaacggagagatgtatcattaaaggactgcatgcggcgactgttctataac
tttgataaaaattacaaggactggcaggctgctgtggagtgcatcgcagtgttggatgtc
ttactgtgcctggctaactacagtcgagggggtgatggtcctatgtgtcgtccagtaatt
ctgttgccaggagaagatactcctccctttctagaccttaaaggatcacgccacccctgc
attacgaagactttttttggtgatgactttattccaaatgacattctaataggctgtgag
gaagaggaagaaaatggcaaagcttactgtgtgcttgttactggaccgaatatggggggc
aagtctacgctcatgagacaggccggcctactggttgtaatggcccagatgggttgttat
gtaccagctgaagtgtgtaggctcacaccaatcgatagagtgtttactagacttggtgcc
tcagacagaataatgtcaggtgaaagtacattttttgttgaattgagtgaaactgccagt
atacttaaacatgcaacagcacattctctggtgcttgtggatgaattaggaagaggtact
gcaacatttgatgggacagcaatagcaaatgcagttgttaaagaacttgctgagaatata
aagtgtcgtacattgttttctacccactaccattcactggttgaagactattctcaaaat
gttgcagtgcgcctaggacacatggcatgcatggtagaaaatgaatgtgaagatcccagc
caggagactattaccttcctgtataaattcattaaaggagcctgtcctaaaagctatggc
tttaatgcagcaaggcttgctaatcttccagaggaggttattcaaaagggacatagaaaa
gcaagagaatttgagaagatgactcagtcactgcgattatttcgggaagtttgtctggct
agtgaaagctcgactgtagatgctgaagctgtccgtaagttgctgactttgattgaggaa
ttatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (8)   
   Pfam (8)   
All databases (38)   

Download RDF
DBGET integrated database retrieval system