KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 107276500
Entry
107276500         CDS       T01015                                 
Name
(RefSeq) transcription initiation factor IIB-like
  KO
K03124  transcription initiation factor TFIIB
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107276500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    107276500
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     107276500
 Prokaryotic type
  Archaeal type
    TFB
     107276500
SSDB
Motif
Pfam: TFIIB TF_Zn_Ribbon Cyclin_N XPB_DRD Ribosomal_S27e
Other DBs
NCBI-GeneID: 107276500
NCBI-ProteinID: XP_015629466
Position
3:4886185..4887399
AA seq 333 aa
MSKTESNPTPSSIRLRHWQKDKSATMCSVAGNEQCYCPECHRTTVVVVDHATGDTICTEC
ALVLEERYIDETSEWRTFSDAGSGEDRDPNRVGGCSDPFLSHAELGTVVAPAKRQAKDTA
SPPHVRVDSKSGQDSSLAVAFRAISDMADRLQLVATIRDRAKELFKKMEEAKLCARVRNR
DAAYAACLHIACRNEGNPRTLKELASVMRDCQDKKEIGRMERIIRRHLGEEAGTAMEMGV
VRAADYMSRFGSRLGMGKPEVREAQRAAQTLEDKLDVRRNPESIAAAIIYMVVQRAGAQT
SARDVSKASGVAEATIKEACKELSQHEELLFSS
NT seq 1002 nt   +upstreamnt  +downstreamnt
atgtccaagaccgagagtaatccgactccgagttcgatcaggctgcgtcattggcaaaag
gataaatccgcgacgatgtgtagcgtcgccggcaacgagcagtgttactgcccggagtgc
caccgcacgacggtggtggtggtggaccacgccaccggcgacaccatctgcaccgagtgc
gcgctcgtcctggaggagcggtacatcgacgagacctccgagtggcgcacgttctccgac
gccggcagcggcgaggaccgcgaccccaaccgcgtcggcggctgctccgaccccttcctc
tcgcacgcggagctcggcaccgtcgtcgcgccggccaagcggcaagcgaaggacaccgcc
tccccgcctcatgtgcgcgtcgactccaagtcgggccaagacagctcgctggccgtcgcg
ttccgcgccatctccgacatggcggaccgcctccagctcgtggccaccatcagagaccgg
gccaaggagctgttcaagaagatggaggaggcgaagctgtgcgccagggtgcggaaccgc
gacgccgcgtacgcggcctgcctccacatcgcgtgccgcaacgagggcaacccgcggacg
ctgaaggagctcgcctcggtgatgcgcgattgccaggacaagaaggagatcgggaggatg
gagaggatcatcaggaggcacctcggggaggaggccgggacggccatggagatgggcgtc
gtgcgcgccgccgactacatgagccgcttcggctcgcggctcgggatgggcaagccggag
gtgcgggaggcgcagagggcggcgcagacgctggaggacaagctcgacgtgcggcgcaac
ccggagtccatcgccgctgcgatcatctacatggtggtgcagcgcgccggcgcccagacg
tccgcgcgcgacgtgtccaaggcctccggcgtcgccgaggcaaccatcaaggaggcctgc
aaggagctgagccagcatgaagagctgctcttctcctcttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (31)   

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