KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4331991
Entry
4331991           CDS       T01015                                 
Name
(RefSeq) DNA repair protein UVH3 isoform X1
  KO
K10846  DNA excision repair protein ERCC-5
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    4331991
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:osa03400]
    4331991
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     4331991
SSDB
Motif
Pfam: XPG_I XPG_N XPG_I_2 UBM
Other DBs
NCBI-GeneID: 4331991
NCBI-ProteinID: XP_015632826
UniProt: Q0DU61
Position
3:5508661..5517046
AA seq 1470 aa
MGVHGLWELLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMIRDAHLLGFLR
RICKLLFLRARPVFVFDGATPALKRRTLAARRRHRDAAQAKVRKTAEKLLLSHLKARKLE
ELAAQIKSDRAKHDNKGKQVESSKMGEIEKINGEQKKNNDGENSGGIVAPIDQEKLDELL
AASLAAEEEANLTGKGKQYTVSVPLQEAADISEDDDEDDGEMIFPMTTGDIDPAVLASLP
PSMQLDLLVQMRERVMAENRQKYQKIKKEPAKFSELQIQSYLKTVAFRREIDEVQRGAAG
RGVGGVQTSKIASEANREFIFSSSFTGDKQTLAQRGGKEHIVDSIKSKREINPAVFKSNP
TSSSSSIKPNNSEPLGSFGPDVETYRDERGRIRVSRVKAMGIRMTRDIQRNLDFIKEHEQ
VRNRGHDSVVEGLANNEEPPDFPEHLFEGNGLRSSLHLSEDYDETASDNHHTSSLVGSDK
ISEGDYHGSKETIEISFADDQTEVKDNDDQIFLHLASGASSNLFTTEQTDGSDCITKEGV
LESETPPMQVDEKDHQASLMDNFCTDDEIEWEEGGCDVPGGPSSNENDQSKVPKGDLEED
ALVQEAIRRSLEDFKKQEHENVTPEDLQASFEDKPLQSYDDVPKPAGAAGKTADKIGKEI
NCEENDIVHGSLVVDGRENENQTQPENSDGHADMKRAYLLDPLPPCNMTASTSAAKSPEG
SEVQHHNSMLHSIRTPEWPKNDSDKVMTQYSLNSDNSKCKIDDSCTGETSRSLQNDLLMD
ELVPDTAVQKENMIQRTTDLSTSEINYTKLNDNVGIYSVSASNLEKELSLLRQEQEYLGN
ERRKLESHAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSD
VFLFGARNVYKNIFDDRKYVETYLMKDIESELGLTREQLIRMAMLLGSDYTEGISGIGIV
NAIEVAHAFPEEDGLQKFREWVESPDPTLLGKLGMESGSSSKKKKSGRNHSDGKGNSLEP
EYAKGSDDSQSSNETQRIKEIFMSKHRNVSKNWHIPSTFPSEAVINAYISPQVDDSTEPF
SWGRPDSGLLRKLCWERFGWSKEKADELLIPVLREYNKHETQLRMEAFYSFNERFAKIRS
KRIKKAIKGITGKSFLETDELDHDSPSTSNTSKKKERTSSGRGRAKGQRTKDVGPGNTGN
QDYDIADSLVDAGEHTTEKSTSSKKRTANSSGGSRGKGRRSMNAAHVIIGNGEDSDVSNL
ASDEDSHIRHTNDYESEGLTLRRSNRKRKQVTYAEDGQEADDNDVSIHQIDENQGQGSLE
EDMCHMAGLDTQSNLLHQDTSELNIDQTHTDPSDMNEDPSGFELPEDCHTDTAPKDYLFT
GGGFCMEEGDEQDTGVDQSGAEMEHETRDACEGIDEVSESQSGKSMSYSATGEGTENANT
EARGASSSQGRNASRGSGAVPKLTKRRRKS
NT seq 4413 nt   +upstreamnt  +downstreamnt
atgggagtgcacgggctgtgggagctgctggctcccgtggggcggcgcgtgtcggtggag
accctggcggggaagcggctggcggtggacgcgagcatctggatggtgcagttcatgcgg
gcgatgcgggacgacaagggcgacatgatccgcgacgcccacctcctcgggttcctccgc
cgaatctgcaagctcctcttcctccgcgcgcgcccggtcttcgtcttcgacggcgccacc
ccggccctcaagcggcgcaccctcgccgcccgccgccgccaccgcgacgccgcccaggcc
aaggtccggaagaccgccgagaagctcctgctctcccatctcaaggctaggaagcttgaa
gaattggcagctcaaatcaagagtgacagggctaagcatgacaataaaggcaagcaagtt
gagagcagtaaaatgggagaaattgagaaaattaatggagagcaaaagaaaaacaacgat
ggagaaaacagcggggggattgtagcaccaatcgaccaggagaaactggatgaactgctg
gccgcatcacttgctgcagaggaagaggcaaatttgactggcaaaggaaaacagtatact
gtaagtgttccattgcaagaagcagctgacattagtgaggatgatgacgaggatgatgga
gagatgatctttcctatgacaacaggtgatattgatcctgcagtattagcttcactccct
ccatcaatgcagttggatcttcttgttcagatgagggagagagtgatggctgaaaacagg
cagaagtaccagaaaattaaaaaggaacctgcaaaattctcagagctccaaatacagtcg
tacctgaaaactgttgctttcaggcgagagatagatgaagttcagaggggtgctgcaggc
aggggtgttggaggcgtccaaacatcaaaaatagcatctgaagctaacagagagttcatt
ttctcatcatcattcactggtgataaacagacattagcacaaagaggcggaaaggagcat
attgtcgatagcattaaatcaaagagggaaatcaatcctgctgtcttcaaatccaatccc
actagtagttctagctcaattaagcctaacaacagtgagcctttggggagttttggacct
gatgttgagacatatcgtgatgagagaggaaggattagagtaagtagggtcaaagcaatg
ggaattcgtatgactcgtgatattcaaaggaatttggattttatcaaagagcatgaacag
gtcagaaacagggggcatgactctgtagttgaaggattagctaacaatgaagagcctcca
gattttccagaacatctttttgaaggtaatgggctgcggagttctcttcatctcagcgaa
gattatgatgaaactgctagcgataaccatcacacatcatcactagtaggatctgacaaa
atttctgagggtgattatcatggaagcaaagaaacaatagagatatcctttgctgacgat
caaacagaagtgaaggacaatgatgaccaaattttcttgcatttagcttctggagcttca
tccaacttattcactacagaacagactgatggctctgattgcattacaaaagaaggcgta
cttgaaagtgaaacacctcctatgcaagttgatgagaaggatcaccaagcatcactgatg
gacaatttctgtactgatgatgagatagagtgggaagaaggtggttgtgatgttcctgga
ggtccttccagtaatgaaaacgatcaatctaaagtaccgaaaggagatctagaagaagat
gcccttgttcaggaagctataaggagaagtttagaggattttaagaagcaagaacatgaa
aatgtgacccctgaagatttacaggcatcttttgaagacaaacctttgcaatcttatgat
gatgttcctaagccagctggagctgcaggaaagacagctgataaaattgggaaggaaata
aattgtgaagagaatgatatagtgcatggatcacttgtagttgatggacgagaaaacgag
aatcagactcaacccgagaatagtgatgggcatgccgatatgaagagagcttatttgttg
gatcctctccctccatgtaatatgaccgccagtactagtgctgcaaaatcacctgagggc
tcagaagttcagcaccacaattcaatgttacattcaatcagaactcccgagtggcctaag
aacgatagcgataaagttatgacgcaatacagtttgaattctgataattcaaagtgcaaa
atagatgattcttgtactggagaaacctcgaggtcactccaaaatgaccttttgatggat
gaactggttcctgacactgctgtacaaaaagaaaatatgatccagagaactacggactta
tccacatctgagataaactatacgaaactgaacgataatgttggtatatatagtgtgtca
gctagtaatctagaaaaggaattatctcttctgagacaggaacaagaatatctcggaaat
gaaaggcggaagcttgaaagccacgcagagtctgtcagcagtgagatgtttgctgaatgc
caggaattgcttcaaatgtttggcttgccatatataattgcacctatggaagctgaagct
cagtgtgcatacatggaaatgactaaccttgtcgatggagttgttactgatgattcagat
gttttcctgtttggtgcaaggaatgtttataagaacatatttgacgataggaaatatgtt
gaaacatacttaatgaaggacattgagtctgagcttggtctaacaagagaacaattaata
cgtatggcaatgcttcttgggagtgactacactgaaggaattagtggcattggcattgtg
aatgctattgaagttgcacacgcatttcctgaggaagatgggctccaaaagttcagggag
tgggttgaatcaccagatccaactttactgggaaaacttggtatggaaagtggtagcagc
tcaaagaaaaaaaagtctggcagaaatcattcagacggaaagggaaacagccttgagcct
gaatacgctaaaggttctgatgacagccaatcttctaatgagacccaacgcatcaaggaa
atatttatgagtaagcataggaatgtgagcaagaactggcatattccttctacttttcct
agtgaagcagtcataaacgcatatatttccccacaagttgatgattcaacagaaccattt
tcctggggaagaccagattcaggcttactgcgcaagttatgttgggaaaggtttgggtgg
agcaaggaaaaggctgatgaactgctaattcctgttttgagagagtataataagcacgag
actcaactacgcatggaggcgttttactcattcaatgagagatttgcaaaaattcgtagc
aaaaggattaagaaagctatcaagggtattacagggaaaagctttctagagacagatgaa
cttgatcatgatagtcccagtactagtaataccagcaagaagaaagagagaacctcctct
ggtcgtggtagggctaaagggcaaagaaccaaagatgttgggcctggtaacacaggaaat
caggactatgacattgctgatagcttagtagatgcaggtgaacatactacagaaaaaagc
acgtccagtaagaaaagaactgcaaactcctctggtggttcaagaggcaaaggaagaaga
agcatgaatgctgcacatgtgataattggaaatggggaagattctgatgtctctaattta
gcatctgatgaggattcccatattagacataccaacgactatgaatcagagggattgaca
ttacgcaggtcaaataggaagcgtaagcaggtcacatacgcggaagatggtcaggaagct
gatgataatgatgtttccatacatcaaatcgatgaaaatcagggccaaggttctttggag
gaggacatgtgtcacatggctggacttgacacacaatctaatctgctccatcaggatacg
agtgaattaaacatcgatcaaacgcatacagatccctctgatatgaacgaagatccttcg
ggctttgagttacccgaggattgccatacggacactgcaccaaaagactatctcttcacc
ggtggtggattctgcatggaagagggtgacgagcaagatacgggagtggatcaatctggt
gcagaaatggagcatgaaacacgtgatgcctgtgagggtattgacgaggtttctgaaagt
caaagcggtaaaagcatgagctattcggcgactggagagggcacagagaatgcaaataca
gaggcccgaggggcgtcttcatcgcagggacgcaatgcaagccgtggttcaggtgccgtg
ccgaagcttacaaagcgtaggagaaaatcatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (40)   
   KEGG ORTHOLOGY (1)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (4)   
   Pfam (4)   
All databases (55)   

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