KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4335928
Entry
4335928           CDS       T01015                                 
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
  KO
K14328  regulator of nonsense transcripts 3
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03013  Nucleocytoplasmic transport
osa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    4335928
   03015 mRNA surveillance pathway
    4335928
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4335928
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     4335928
   mRNA cycle factors
    P-body specific factors
     4335928
SSDB
Motif
Pfam: Smg4_UPF3 RRM_2
Other DBs
NCBI-GeneID: 4335928
NCBI-ProteinID: XP_015635823
Position
4:complement(21897067..21904778)
AA seq 513 aa
MAAARAHVKDPAHRTKVVLRRLPPAIAQQAVVEQVDARFGGRYDWSCFRPGNASQKNHRY
SRLYLNFKGPEDVVEFAEVFNGHVFVNEKGAQFKALVEYAPSQQVPKSNTKKDARQGTIM
KDPEYLEFLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMA
QRSGSSRLSRKVAGVVTSSPSPSKRGSEKRRTSASTQYVLRENAKEKPTYILVPKRDEHA
QREKGTAGTSDATSGGISGSAHVAENKKEKIVLLKGRARVDSNTSDVTSQQQSGTPMKNA
AQSSSRQDPRLEGSGRIIKTILSNKEGRHVVTSQHDQEGHIITAEKRPPRIPNPRSVVKD
QVVENAEKNHLDDKHSHLHGSGLISEKTERHARNRDRPDRGVWAPRRYDKSASGGTHSSS
SEFSPMQQHSGENFCQQADGHGERKIDPRGHGGIRGGPVENGHRHANRRGPPRGLKEMEI
SASTSDGKPSKRASANYGAHERQVWVQKSSSAT
NT seq 1542 nt   +upstreamnt  +downstreamnt
atggcggcggcgcgcgcgcacgtgaaggacccggcgcaccggaccaaggtggtgctccgg
aggctgccgccggcgatcgcgcagcaggccgtcgtggaacaggtcgacgcgcgcttcggc
ggccggtacgactggtcgtgcttccgccccggcaatgccagccaaaagaatcacagatat
tctcgactctaccttaacttcaagggcccagaagatgtcgttgaatttgctgaggtcttc
aatggtcatgtgtttgtgaatgaaaagggtgctcaatttaaagctcttgtggaatatgca
ccatcgcaacaggtccccaagtcaaacacgaagaaagatgctcgtcaaggaactataatg
aaagatccggaatacttggagtttcttgaatcgatttcaaagcctgctgagcatctgcca
agtgctgaaattcagctcgaaaggaaagaagctgaaagggcagctgctggaaaggaacca
cctgttgtgacgcctcttatggtctatgttcgccagcaaagggcagctaagagtatggct
cagagatctggaagtagtagactcagtagaaaagttgcgggtgttgttactagcagtcct
agtccttctaaaaggggttctgagaagcgcaggacctctgcttcgacgcaatatgttcta
cgagagaatgctaaggagaagccaacttatatcttagtgccaaagagagacgagcatgcg
cagagggaaaaaggtactgctggaacttcagatgctacaagtggcgggatttctggttct
gctcatgtcgcggaaaacaaaaaagagaaaattgtgcttttgaaaggaagagcaagggtc
gattctaatacatctgatgtcacatctcagcagcagtcagggacccctatgaaaaatgct
gcacaatctagttctaggcaagatccgcggcttgagggcagtggcagaattattaagact
atactttcaaacaaggaaggacggcatgtggttacgtctcaacatgatcaggaaggtcac
ataattacagctgagaagcgcccaccacggattccaaacccacgttccgttgttaaagat
caggtagttgaaaatgctgagaaaaaccatttggatgacaaacatagtcatctccatggt
tctgggctcatcagtgaaaagactgaaagacatgctagaaatagagataggcctgatcgt
ggtgtatgggcccctcgtcgctatgacaaatctgcatcaggtgggacgcattcctcgtca
tctgagttctcaccaatgcagcaacattctggtgaaaatttctgtcagcaagcagatggc
catggagagagaaaaatagacccaaggggtcatggtggtattcgcggaggccctgtggaa
aatggacatagacatgctaaccgccgtggtcctccacgtggtctgaaggagatggaaatt
tctgcaagcacatctgatggaaagccttcaaagagagcctctgccaactatggtgctcat
gagaggcaagtgtgggttcaaaaatcaagctcggcgacgtga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (45)   

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