KEGG   Ostreococcus tauri: OT_ostta14g00370
Entry
OT_ostta14g00370  CDS       T01358                                 
Name
(RefSeq) Helicase, C-terminal
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
Organism
ota  Ostreococcus tauri
Pathway
ota03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ota00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    OT_ostta14g00370
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ota03041]
    OT_ostta14g00370
Enzymes [BR:ota01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     OT_ostta14g00370
Spliceosome [BR:ota03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    OT_ostta14g00370
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    OT_ostta14g00370
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_N HA2_C DEAD AAA_22 nSTAND3 AAA_19 SRP54 IATP ABC_tran PhoH AAA_23
Other DBs
NCBI-GeneID: 9837647
NCBI-ProteinID: XP_003082838
Position
14:70162..73419
AA seq 1085 aa
MTLDDVIRDGLHDLLGMSARALESFVADAASRVDFNPHALTTELVHAGLSSDDGARAFAE
RVCACGRDGRDARERAPRAVVAAAAGSSFAAADAYALVEATPSSSENDDATVSRGRRRAE
KRGKKLRRRAVDDGGSSEEDAVAAATRRVALGRARGTRDDDAETTPESESEETTRRREME
EDARERDAFEERLRARDAAKTKKVNEREPSEAERAEAERRGARLESDAQRMDLVPELRKV
SRQEYLKKRELQKLEELKESIRETEYFYEGQDVTEEQRADLEKRKKVYELAMEQINSINE
ALEERYQIPTAYDDPNKPKSMNERFAVARQRYKEPDPEDDANPFKDQDRWEAHQVKQAQT
QFGAKNKKTEEKQYDLLYDDQIKFIKDEIMAGDGVSDESDGDDVSDRSDESEMDEEKRTK
LALAGKLGKRAKIEADRKSLPIFPYRDGLIKAVEDHQVVVIVGETGSGKTTQIPQYMWEA
GFGGKTQKIGCTQPRRVAAMSVAARVAEEAGVKLGHEVGYSIRFEDCTNDKTRLKYMTDG
MLLREFLGEPDLSSYAVMMVDEAHERTLHTDVLFGLVKDIARFRPEIKLLISSATLDAEK
FSEYFDFAPIFRIPGRRFPVDILYTQQPEADYVDASVVTILQIHLTQPEGDILVFCTGQE
EIENIEELLKTRIHEMEKKPPELIIAPIYSSLPSDLQAKIFEDPPKGARKVVLATNIAET
SLTIDGIKYVIDPGFCKQKSYNPRTGMESLVVTPTSQASALQRAGRAGRTSAGKCFRLYT
AWSFQNELDPNTVPEIQRTNLGNVVLMLKSLGINDLMNFDFMDPPPAETLLRALEQLYAL
GALNDRGELTKLGRKMAEFPLDPMLSKTLCASDKYKVSDEVMTICCMLSCGNAVFYRPKD
KLQLADHAHKAFHIGNPGDHIALLNVYNSWRDADFSVTWCYENFVQQRTMKTARDIREQL
EKLLERVEIEPSSNPNDIDGIKKCITSGFFYHTAKLQKNGSYRTVKNPQTVAIHPSSGLA
KELPRWVVYFELVYTSKEYMRQVIEIKPEWLVEIAPHYYKRKEIEGETIKMGKAGTGKKS
DVVLA
NT seq 3258 nt   +upstreamnt  +downstreamnt
atgacgctcgacgacgtcatccgagacggcctccacgacctcctcgggatgtccgcgcgc
gcgctcgagtccttcgtcgcggacgcggcgtcgagggttgatttcaatccacacgcgttg
accaccgagctcgtccacgccgggctctcgagcgacgacggcgcgcgcgcgttcgccgag
cgcgtgtgcgcgtgcggtcgcgacgggcgagacgcgcgcgagcgggcgccgagggcggtg
gtggcggcggcggctggatcatcattcgcggcggcggacgcgtacgcgctcgtggaggcg
acgccgtcgagctcggagaacgacgacgcgacggtgtctcgagggcgacggcgcgcggag
aaacgtgggaagaagctgcggcgacgggcggtggatgacggggggtcgagcgaggaggac
gcggtggcggcggcgacgcggcgggtcgcgctcgggcgggcgcgggggacgcgggacgac
gacgcggagacgacgccggagagcgagagcgaggagacgacgcggcgacgggagatggag
gaggatgcgcgggagcgggatgcgtttgaggaacggttgcgggcgagggatgcggcgaag
acgaaaaaggtgaatgagcgagagccgagcgaggcggagcgcgccgaggcggaacgacga
ggggcgcgtctcgagagcgatgcgcagcgcatggatctcgttccggagcttcgtaaggtg
tcgagacaggagtacttgaagaagcgcgaactccaaaaactcgaagaactcaaggaatcg
attcgtgagacggagtacttttacgaaggccaagacgtgactgaggaacaacgggcggat
ctcgagaagaggaaaaaggtgtacgagctcgcgatggaacagatcaatagcattaacgag
gcgctggaggagcggtatcaaattcccacggcgtatgacgatccgaacaagcctaaatcg
atgaacgagcggttcgccgtcgcgagacagcggtacaaggagccggatccggaggacgac
gccaacccgttcaaggatcaggatcgatgggaggcgcatcaggtgaagcaagcgcagacg
cagttcggggcgaaaaataaaaagacagaggagaagcagtacgatctcctgtacgacgat
cagatcaagttcattaaggatgaaatcatggcgggagacggcgtatccgatgagagcgac
ggcgacgacgtctccgatcggagcgacgagagcgagatggatgaggagaagcgcacgaag
ctggcgttggcagggaagcttggaaagcgggcgaagatcgaagcagatcgtaaatcgctg
ccgattttcccatatcgcgatggtctcatcaaggctgtcgaggatcatcaagtcgtcgtc
atcgtcggcgaaaccggttcgggcaaaacgacgcagattcctcaatacatgtgggaggct
ggcttcggtgggaagacgcaaaagattggatgcacacagccgagacgcgtcgccgcgatg
tctgtcgcggcgcgcgtcgccgaagaggctggggtcaagcttggacacgaagtgggttac
tcgattcgtttcgaggattgcacaaacgacaagactcgactcaagtacatgacggacggt
atgcttttgcgcgaatttctaggcgagcccgatctctcttcgtatgcggtgatgatggtg
gacgaagcgcacgagcgcaccctgcacacggacgtgctcttcggtctcgtcaaggacatt
gctcgcttccgtccagagatcaaacttttgatatcctccgccacgctcgacgcagaaaag
ttcagcgagtattttgattttgcgccaatctttaggattccaggtcgtaggttcccggtc
gacatcttgtacactcaacagcccgaggctgattacgtcgacgcgtccgtggtgaccatc
ttacaaattcacctgacgcaaccagagggcgacatcttggtattttgcaccggtcaggag
gagattgaaaacatcgaagagcttctgaagacgagaatccatgagatggagaagaaaccg
ccagaactcatcatcgccccgatatattcttcacttccgagcgatttacaggcgaagatt
tttgaggatccacccaaaggcgcgcgcaaggttgtcttggcgacgaacatcgccgagacg
tcgctcacgattgatggcatcaagtacgtcatcgatcctgggttttgcaagcagaagagc
tataatccgcgcaccggtatggaatctctcgtcgtcacaccgacgtcgcaggcgagcgcg
ttgcagcgcgccggtcgcgccggtcgtacctcggcgggtaaatgtttccgtctgtacacg
gcgtggagcttccaaaacgagctcgacccgaacacggtgccggagattcaacggacaaac
cttgggaacgtcgtactcatgctcaaatcgctcgggatcaatgacctgatgaactttgat
ttcatggaccccccgcccgcggagacgctcctgcgagcgctcgaacagttgtacgctctc
ggcgcgctgaatgaccgcggtgagctcacaaagctcggacgtaagatggccgagttcccc
ctcgacccaatgctctccaagacgctctgcgcgagcgacaagtacaaggtgagcgatgaa
gtcatgacgatatgctgtatgctgtcttgcggcaacgccgtgttctatcgcccgaaagac
aaactacagctcgccgatcacgcgcacaaagcgtttcacatcggcaatcccggtgatcac
atcgcactcttaaacgtgtacaactcttggcgcgacgccgatttttccgtgacttggtgt
tacgaaaatttcgtgcagcagcgaacgatgaagacggcgcgggacatccgagagcaactc
gaaaagcttctcgagcgcgtcgaaatcgagccctcgtccaatccaaacgacatcgacggc
atcaagaagtgcatcacgagtggcttcttctatcacacggccaagctgcaaaagaacggg
agctatcgcacggtgaaaaatccgcaaacggtggcgatccacccctcgagcggactcgcg
aaagagcttcctcgatgggtcgtgtactttgagctcgtgtatacgtccaaggagtacatg
agacaggtgatcgagatcaaacccgagtggctcgtcgaaatcgcgccgcactactacaag
aggaaggagatcgagggcgagacgatcaagatgggtaaggcgggcacgggcaagaagtca
gacgtcgtcttggcgtga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (13)   
   Pfam (13)   
All databases (24)   

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