KEGG   Opitutus terrae: Oter_0283
Entry
Oter_0283         CDS       T00689                                 
Name
(GenBank) RNA binding metal dependent phosphohydrolase
  KO
K18682  ribonucrease Y [EC:3.1.-.-]
Organism
ote  Opitutus terrae
Pathway
ote03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ote00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Oter_0283
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ote03019]
    Oter_0283
Messenger RNA biogenesis [BR:ote03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Oter_0283
SSDB
Motif
Pfam: HD RNase_Y_N KH_1 HDOD KhpA-B_KH DUF6286 LapA_dom KH_2
Other DBs
NCBI-ProteinID: ACB73573
UniProt: B1ZQ93
Position
complement(316157..317728)
AA seq 523 aa
MSAADFAFLIAESDLFDWSLTVALVIGGALGFLVVWAFTRHTRRMAHEQAAELEEVARRE
AAVAAEEIRQKAEAEIQEKRAELNRDFDRREIESEVRLREIRAHEESLALLDYQLEQRQE
RLNRETAAMRQARDAIRALSKSVRQRLEGVSQMDAESIRQALREEVQLECQDELRALRRE
IMEKSEQDLQTEGRRIMIAAMQRLASKPNNDLTSTIVSLPNEDMKGRIIGREGRNIKAFE
AATGVTVLIDESPQTVLISSFDPIRREVARGALEALIKDGRIHPATIEEFVKRAHEEIEL
SAMQAGEDAVTRLNINGLHPEIIKLLGKLKFRFSYNQNVLDHSVETASLASMIASEVGLD
PNVAKRAGLLHDIGKAVNADYEGSHAHIGAEFIRRYGETPIVVNSVAAHHEEVKPETVYA
GLVILADTISATRPGARAESMAGYIQRLGRLEKLAMAIDGVQQAFAIQAGREIRVVVSPQ
TVTDDRAREIAKELRKRIEAELQYPSTIKITVIREQRFTETAT
NT seq 1572 nt   +upstreamnt  +downstreamnt
gtgagcgcagccgacttcgcgtttctgatagccgagagcgacctgttcgattggtcgctc
acggtggcattggtcattggcggggcactgggttttctggtcgtctgggcgttcacgcgg
cacacgcgccggatggcgcatgagcaggcggcggaactcgaagaggtggcgcgccgcgag
gcagccgtggccgcggaggagattcgccagaaagccgaagcggaaattcaggagaaacgc
gccgagctgaaccgcgatttcgaccggcgcgaaatcgagagcgaggtgcggctccgcgaa
atccgcgcgcacgaggaatcgctcgcgctgctcgactaccaactcgagcagcggcaggag
cggctcaaccgcgagaccgcggcgatgcggcaggcgcgcgatgcgatccgggcgctgtcg
aaaagcgtgcggcagcggctcgagggcgtgtcgcagatggacgccgagtcgatccgccag
gcgctgcgcgaggaggtgcagctcgaatgccaggacgaactccgcgcactgcgacgcgag
atcatggagaagtccgagcaggacctgcagaccgaaggccgccgaatcatgatcgccgcg
atgcagcggctcgccagcaagccgaacaacgacctgacgtcgaccatcgtgtcgctgccg
aacgaggacatgaaaggccggatcatcggccgcgaagggcgcaacatcaaagcgttcgag
gcggcgacgggcgtgaccgtgctcatcgacgagtcgcctcagacggtcttgatttcatcg
ttcgacccgatccggcgcgaagtggcgcgcggggccctggaggcgttgatcaaggacggc
cggattcatcccgcgacgatcgaggagttcgtgaagcgtgcgcacgaggagatcgagctc
tcggcgatgcaggccggcgaggacgcggtgacgcggctcaatatcaacgggctgcacccg
gaaatcatcaagctgctcggcaaactgaaattccgcttctcctacaaccagaacgtgctc
gatcactcggtcgagaccgcgtcgctggcgtcgatgattgcgagcgaggtcgggctcgat
ccgaatgtcgcgaagcgcgcggggctgctgcacgacatcggcaaggcggtgaacgccgac
tacgaaggcagccatgcgcacatcggcgcggaatttatccggcgctatggcgagacgccg
atcgtggtgaattcggttgcggcccatcacgaggaggtgaagccggagacggtttacgcc
gggttggtgattttggccgatacgatctccgccacgcggccgggcgcgcgcgcggaatcg
atggcaggttacatccagcggctcggccggctggaaaaactggcgatggcgatcgacggc
gtgcagcaggcgtttgccattcaggccggccgggagattcgcgtcgtggtgtcgccgcaa
accgtgacggacgatcgggcgcgggagatcgcgaaggagctgcgcaagcggatcgaggcc
gagctgcagtatccgagcacgatcaagatcacggtcatccgcgagcagcggttcacggag
accgcgacctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (36)   

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