KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112233851
Entry
112233851         CDS       T05605                                 
Symbol
chd3
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 3
  KO
K11642  chromodomain-helicase-DNA-binding protein 3 [EC:5.6.2.-]
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    112233851 (chd3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:otw03036]
    112233851 (chd3)
Chromosome and associated proteins [BR:otw03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    112233851 (chd3)
  Chromatin remodeling factors
   NuRD complex
    112233851 (chd3)
SSDB
Motif
Pfam: SNF2-rel_dom CHDCT2 CHDII_SANT-like CHDNT Helicase_C PHD DUF1087 Chromo HDA2-3 ResIII HTH_23 HMG_box DEAD AAA_22 PHD_2 zf-HC5HC2H_2
Other DBs
NCBI-GeneID: 112233851
NCBI-ProteinID: XP_024257513
Position
LG15:complement(21381926..21409431)
AA seq 2165 aa
MSSPLRSCEEYKGMLVNSKGGDFDEEEDDGDLDENASDINSPAAPRETATLAAPEEEGGA
LDRDSLGRKKRGPKKKKETKKKEKEKEGKLSKAKKRKKIDSDVERDSERERDYGENSDSA
ASIFACEKKKKKKHKEKKEKKKQKMKKDNGDSTQEETIKPIEQKTSAQLAKDWGLEDVDH
TFTEDDYRTLTNYKAFSQSMRPMIAKKNPKIPMSKMMTILGVKWREFSSNNPFKGSGAAA
VAAAAAAAAIAVAEQVSASTASPSPEPPPPRKQPQTPRLAPQPPPPLRKAKTKEGKGPGY
KKSRSKSPRVLAERKKAVAAAAAAAVAAAAAAKAKKMAPIRIKLGPLGNKRKKSSSSGDD
VEEEDSEQEDSSVHSSSVRSDSSPRVKKNKRGRPAKKKKKMLGEGDVEVDGYETDHQDYC
EVCQQGGEIILCDTCPRAYHLVCLEPELEKAPEGKWSCPHCEKEGIQWEAKDEDFEEFEE
ESEDMVVPEVPGVGLLVGLEEEEDEHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPE
IPNGEWLCPRCTCPAIKGRVQRILHWRWGEPPDPVPVPPAPDSPTDAPPPXPMKGRAERE
FFVKLVGQSYWHCTWITELQLEIFHSVMFRNYQRKTDMDEPPSLDYGSGGEEESVKSEKR
RLKDPDYAALDDKFYKYGIKPEWMMVHRIINHSVDKKGIYHYLVKWRDLTYDQCTWERDN
LEMPEFVIHKANYWAHRDEVMKEAPDMPRRMRSMRMEESEDPHRSPVNDPTIKYEEQPDF
VTATGGTLHLYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLFKEGHTRGPF
LVSAPLSTIINWEREFEMWAPDFYVVTYTGDKDSRAIIRENELTFDDTAIRGGKKAFKLR
REAPIKFHVLLTSYELVTIDQTSLKSIDWACLVVDEAHRLKNNQSKFFRRLNDYKIDHKL
LLTGTPLQNNLEELFHLLNFLTPNRFNNLEGFLEEFADISKEDQIQKLHDLLGPHMLRRL
KADVFKNMPAKTELIVRVELSPMQKKYYKLILTRNFEALNSKGGGNQVSLLNIMMDLKKC
ANHPYLFPVASMEARKTASGAYEGTDLTKASGKLTLLQKMMRKLKDQGHRVLVFSQMTKM
LDLLEDFLDFEGYKYERIDGGVTGALRQEAIDRFNAPGAPQFCFLLSTRAGGLGINLATA
DTVFIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLV
VRPGLGSKAGSMSKQELDDILKFGTEELFKDEIESGDNRDDEGSVIHYDSSAIERLLDRS
QDATDDTDMQNMNEYLSSFKVARYMVREEDKIEEVEREIIKQEECVDPEYWEKLLRHHYE
QQQEDLASKLGKGKRNRKPVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGSRRQSRR
QMRNERDKPLPPLLARVAGNLEVLGFNTRQRKAFLNAVMRWGMPAQDAFSCQWLVRDLRG
KSEKEFKAYVSLFMRHLCEPVADGAETFADGVPREGLCRQPVLTRIGVMSLVKKKIQEFE
HINGRWSLPELKPEMKPEALRPEVSVSSSSRASSPGGTMKTATPTPDPSCTSDNTPCTSK
PATPAPSEKLEKNGKDGEKEEGEKEEGKAPSEPEKDGEKETEGGKAVEGNRSADPEVPPI
PTKEAPQELSPSTTTDREESGTKEEGKETKTTDTPPAPVEEKKGEEEGMEGAPGGTTKQG
SAVKDEKPGSVTLLPGEKMEEEEKGREKENDKGSEEAPVATEASDNKEKMDRQLPSDVMK
EEVKGEKDAGKEVAKEEVAKETLPKPPIIPPERRRFMFNIADGGFTELHTLWQNEERAAI
SSGKMNEIWHRRHDFWLLAGIVLHGYARWQDIQNDPQFAIVNEPFKSQANKGNFLEMKNK
FLARRFKLLEQALVIEEQLRRAAYLNMTQDPVHPAMALNARFAEVECLAESHQHLSKESL
AGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRVPPIAARLQMSERSILSRLASKG
TDTHTPPTIPPGPYATPQNFGPAFTPVPPGVLPMGGANYSQMPPGSFVSEAPEAPGGGGA
GFLKTKEHDIMQRQRVVDLWKDGKSEGSIGQELRMPKSTVHSIIVKYRLSNTVENLPRNG
RPKKP
NT seq 6498 nt   +upstreamnt  +downstreamnt
atgtcctctcctctccggtcctgtgaggaatacaagggcatgttggttaattccaaagga
ggagattttgatgaagaagaggacgacggagatctagacgagaacgcaagcgacataaac
tcgccggcggcgcctcgagaaactgcaacactagccgcgccagaggaagaagggggggca
ttggacagggacagtctagggaggaagaaacgagggcccaagaagaagaaggagacaaag
aagaaggagaaagagaaagaaggaaaactctccaaagctaaaaaacggaaaaagattgac
agtgatgtagagagggactcggagagagagagagactatggagagaactctgacagtgca
gccagcatcttcgcttgtgagaaaaagaagaagaagaaacacaaggagaagaaggagaaa
aaaaaacaaaagatgaaaaaagacaatggggacagcacgcaagaggagacaataaagcca
atagaacagaagacgtcggcccagctggctaaagactggggtctggaggatgtggatcat
accttcactgaagatgactaccgcacactcaccaactacaaagcctttagccagtctatg
aggcccatgatcgccaagaagaaccctaagatccccatgtccaagatgatgaccatcctg
ggggtcaagtggagggagttcagttccaacaaccccttcaagggctcaggtgctgcggcc
gtggcagctgcagccgcggccgccgccattgccgtcgccgagcaggtctccgcatcaacc
gcttccccatccccggagcccccaccaccccggaagcagccccaaaccccccggctggcc
ccccagccgccgcccccgctccgcaaggccaagaccaaagagggcaaaggccctggatat
aagaagagtcgcagtaagagtcctcgtgttctggctgagaggaagaaggcggtggcagcg
gctgcagcagcagcagtagcggcggcagcagcagcgaaggccaagaagatggctcccata
cgcatcaaactagggcctctaggcaacaagaggaagaagagcagctctagtggggatgat
gttgaggaggaagattcggagcaggaggactccagtgtccacagctcctcggtccgctcc
gacagctcgccccgcgtcaagaagaacaaaagaggacggcccgccaagaagaagaagaaa
atgctgggtgagggtgatgtggaggtggatggttatgagacagaccaccaggactactgt
gaggtctgccagcagggaggggagattattctgtgtgacacctgtcccagagcctaccac
ctggtctgtctggagcctgagctggagaaggcccccgagggcaagtggagctgcccccat
tgtgagaaagaggggatccagtgggaagcgaaggatgaggactttgaggagtttgaggag
gagagtgaggacatggtggtaccagaagtacctggggttggactgctggtaggactggag
gaagaggaggatgagcacatggagttctgcagggtctgtaaggatgggggggaactatta
tgctgcgacacctgtccctcctcctaccacatccactgtctcaacccgcccctgcctgag
atccccaacggagagtggctgtgtccgcgctgcacttgtcctgccatcaaaggcagggta
cagaggatcctccactggcgatggggcgagccccccgatcctgtacccgtgccccccgcc
cccgattctcccactgatgctcccccgccancccccatgaagggcagggccgagagagag
ttctttgtcaagctggtcggacagtcctactggcactgtacctggatcactgaactacag
ctggagatcttccactcggtaatgttccgtaactaccagaggaagacagatatggacgag
cctcccagtctggactatgggtcggggggagaggaggagagtgttaagagtgagaagagg
aggctgaaagaccccgactatgctgccctggatgacaagttctataaatacggcatcaag
cctgaatggatgatggtccaccgcatcatcaaccacagtgtggacaagaaggggatatac
cactacctggtcaagtggagagacctgacctacgaccagtgcacatgggagagagacaac
ctggaaatgccagagtttgtcatccacaaggccaactactgggcacacagggatgaggtg
atgaaggaggccccagacatgccgaggaggatgaggagcatgaggatggaggagagcgaa
gacccacacagatcacctgtcaacgaccctacgataaagtacgaggagcagccagacttt
gtgacagcgacggggggcactctgcacctgtaccagctggaggggctcaactggctgcgt
ttcagctgggcacagggcactgacaccatcctggcagacgagatggggctgggcaagact
atacagaccattgtcttcctctactcactctttaaagagggccacacccgtggcccgttc
ctggtgagtgcccccctctccaccatcattaactgggagagagagtttgagatgtgggcc
ccggacttctacgtggtgacctacacaggggacaaggacagcagagcaatcatcagagag
aacgagctgacctttgacgacacggccattaggggagggaagaaagccttcaaattgagg
agagaagccccaataaagttccatgttctgttgacctcctatgagctggtgacgatagac
cagacctccctgaagtctatagactgggcctgtctagtggtggacgaagcccatcgcctc
aagaacaatcagagcaagttcttcagacgtctgaatgactataagattgaccacaagctg
ctgctgactggtactcctctccagaacaacctggaggagctgttccacctgctcaacttc
ctcactcccaaccgcttcaataacctggaggggttcctggaggagtttgccgacatctcc
aaggaggaccagatccagaagctacatgacctgctgggcccacacatgttgaggaggctg
aaggctgacgtcttcaagaacatgccggccaagacagagctcatcgtacgagtggaactc
agccccatgcagaagaaatactacaagttgattctgacgaggaactttgaggctctgaac
tcgaaaggaggaggtaaccaggtgtctctactcaacatcatgatggacctgaagaagtgt
gccaaccacccctacctcttccctgtcgcctccatggaagcccgtaagactgcaagcgga
gcgtacgagggcacagacctcacaaaggcttctgggaaactgactcttctgcaaaagatg
atgagaaaactgaaggaccaaggtcaccgcgtgctcgtcttctcacagatgactaagatg
ttggacctgttggaggacttcctggactttgagggttataagtacgagaggatcgacgga
ggagtcacaggggctctgagacaggaggccatagaccggttcaatgctcctggtgcgcct
cagttctgtttcctgctgtccaccagggcagggggtttgggtattaacctggctacagct
gataccgtcttcatcttcgactcagactggaacccccacaatgacatccaggcgttcagt
cgcgcccaccgcatcgggcaggccaacaaggtgatgatataccgcttcgtgacccgtgcc
agtgtggaggagcgcatcacccaggtggccaagaggaagatgatgttgacccacctcgtg
gtacggcccggcctgggctccaaggctggatccatgtccaaacaggagctggacgacatc
ctcaagtttggcaccgaggagctgttcaaggacgagattgaatcgggagacaacagggac
gatgagggcagtgtgatccactacgacagctcggccatcgagaggttgctggaccggagc
caggacgctacggatgacacggacatgcagaacatgaacgaatacctgagctccttcaaa
gtggcccgatacatggtccgagaggaggataagattgaggaggtggagcgtgagatcatt
aagcaggaggagtgtgtggacccagaatactgggagaagctgctgagacatcactatgag
caacaacaggaggacctggctagtaaactgggcaagggcaagaggaaccgcaagcctgtc
aactacaacgacgcagcacaggaggaccaagataaccagtccgagtactctgtgggctcc
gaggaggaggatgaagacttcgacgagagaccagaaggttctcgcagacagtcccgccgc
cagatgaggaacgagagagacaagccgttgccccccctgttggccagagtggccggcaac
ctggaggtgttgggcttcaacacgcgccagcggaaggccttcctaaacgcggtgatgcgt
tggggcatgcccgcccaggacgccttctcctgccagtggctggtcagagacctgaggggc
aagagcgagaaggagttcaaggcgtatgtgtctctgtttatgcgtcacctgtgtgagccc
gtggccgacggcgccgagacgttcgccgacggcgtgccgagggagggcctgtgccgtcag
cccgtgctgacccgcatcggtgtcatgtccttggtcaagaagaagatccaggagtttgag
cacatcaacgggcggtggagtctcccagagctgaagccagaaatgaagcctgaggctctg
aggccagaggtcagtgtgtcttcctcctccagagcctcctcccctggagggaccatgaag
actgctacgcccacccctgaccccagctgtacctcagacaacaccccctgcacctccaaa
ccagctacccctgctccctcagagaaactagagaagaacgggaaagacggagagaaggag
gagggagagaaggaggagggtaaggccccgtctgagccagagaaagatggagagaaagag
acggaagggggtaaagcggtagagggcaacaggagtgcagatcctgaagtgcctccaatc
cctacgaaagaagctccgcaagaattatcccctagtacaacaacagacagggaagagagt
ggtacaaaagaggaggggaaagaaacaaaaacgactgacacccctccggccccagtggag
gagaagaaaggagaagaggagggtatggagggcgcaccgggaggaacaactaaacaaggg
tcggcggtcaaagatgagaaaccaggtagtgtaacgctcttacctggcgagaagatggag
gaggaggagaaggggagagagaaggagaacgacaaggggagcgaggaagcccctgtcgcc
acagaagcatcagacaacaaggagaagatggacagacagctaccctctgacgtgatgaaa
gaggaagtaaaaggtgaaaaggatgctgggaaagaagtggcgaaggaggaggttgccaaa
gaaaccttgccgaaaccccccatcatcccacccgagcgacggcgcttcatgttcaacatc
gctgacgggggcttcacggagcttcatacgctgtggcagaacgaggagcgggcggccatc
tcttctgggaagatgaatgagatctggcaccggcggcacgacttctggctgctggcggga
atcgttcttcatgggtacgcgaggtggcaggacatccagaacgacccccagttcgccatt
gtcaacgagcccttcaagtcgcaggccaacaagggcaacttcctggagatgaagaacaaa
ttcctggcccgccgcttcaagttattagagcaggccctggtgatcgaggagcagctgagg
agggcagcctacctgaatatgacccaggacccggtccaccccgccatggccctgaacgcc
cgcttcgccgaggtggagtgtttggctgagtcccaccagcacctcagcaaggagtccctg
gccgggaacaaacctgccaacgcagtgctgcacaaggtgctgaaccagttggaggagctg
ctgagtgacatgaaggctgacgtgacgcggctccctgccacactgtcccgagtcccgccc
atcgccgcacgcctgcagatgtcagagaggagcatcctcagcagactagccagcaagggt
accgacacacacactcccccgaccatccctccaggaccctacgccactcctcagaacttt
ggacccgccttcacccccgtccccccgggagtcttacccatgggaggggccaactacagc
cagatgccccctggatctttcgtatcagaagccccagaagccccgggtggcggcggcgcc
ggcttcctgaagaccaaggagcacgacatcatgcagcggcagcgcgtggtcgacctgtgg
aaggacggcaaatcggaggggtccatcgggcaggagctgaggatgcctaagtccacggtg
cacagcatcatcgtcaagtaccgcctcagtaacaccgtggagaacctgccccgcaacgga
cggcccaagaaaccctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (16)   
   Pfam (16)   
All databases (26)   

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