KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112261002
Entry
112261002         CDS       T05605                                 
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 3 isoform X1
  KO
K11642  chromodomain-helicase-DNA-binding protein 3 [EC:5.6.2.-]
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    112261002
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:otw03036]
    112261002
Chromosome and associated proteins [BR:otw03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    112261002
  Chromatin remodeling factors
   NuRD complex
    112261002
SSDB
Motif
Pfam: SNF2-rel_dom CHDCT2 CHDII_SANT-like Helicase_C CHDNT PHD DUF1087 Chromo HDA2-3 ResIII AAA_22 HMG_box DEAD PHD_2 zf-HC5HC2H_2
Other DBs
NCBI-GeneID: 112261002
NCBI-ProteinID: XP_042184264
Position
LG10:complement(21821732..21875106)
AA seq 2111 aa
MSSPLRSCEEDQGMLVNSEGVDFDEEDEDDGDLDENASDINSPAAPRETATLAAPVEEER
EASDRASLGRKKRGPKKKETKKKEKEKEGKPVKAKKRKKIESDVERDSERERDYGENSDS
AASDFSSEKKKKKKHKEKKEKKTKKKKKDDGDSTHEETTKPIEQKTSAQLAMDWGLEDVD
HTFTEDDYRTLTNYKAFSQSMRPMIAKKNPKIPMSKMMTILGVKWREFSSNNPFKGSGAA
AVAAAAAAAAIAVAEQVSAATPSPEPPPPRKQPQPPRPPPLPPPPLRKAKTKEGKGPGYK
KSRSKSPRVLAERKKAVAAAVAASVAKAKKMSPIRIKLGALGNKRKKSSSSGDDVDEEDS
LQEDSSVHSSSVRSDSSSRVKKNKRGRPAKKNKKMLDEGEVEGDGYETDHQDYCEVCQQG
GEIILCDTCPRAYHLVCLEPELEKAPEGKWSCPHCEKEGIQWEAKDEDFEEFEEESEDMV
VPEVPGVGLLVGLEEEEDDHIEFCRVCKDGGELLCCDTCTSSYHIHCLNPPLPEIPNGEW
LCPRCTCPGIKGRVQRILHWRWGEPPDPVPVPPAPDTPPDAPPPPPMKGRAEREFFVKLT
GQSYWHCTWITELQLEIFHSVMFRNYQRKTDMEEPPSLDYGSGGEEESVKSEKRRLKDPD
YAALDDKFYKYGIKPEWMMVHRIINHSMDKKGIYHYLVKWRDLTYDQCTWERDDLEMPEF
VIHKANYWAHRDEVMKEAPDMPRRMRRMRMEESEDPHRSPVNDPTIKYEEQPDFVTATGG
TLHLYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLFKEGHTRGPFLVSAPL
STIINWEREFEMWAPDFYVVTYTGDKDSRAIIRENELTFDDTAVRGGRKTFKLRREAPIK
FHVLLTSYELVTIDQTSLKSIDWACLVVDEAHRLKNNQSKFFRRLNDYTIDHKLLLTGTP
LQNNLEELFHLLNFLTPNRFNNLEGFLEEFADISKEDQIQKLHDLLGPHMLRRLKADVFK
NMPSKTELIVRVELSPMQKKYYKLILTRNFEALNSKGGGNQVSLLNIMMDLKKCANHPYL
FPVASMEARKTASGAYEGMDLTKASGKLTLLQKMMRKLKDQGHRVLVFSQMTKMLDLLED
FLDFEGYKYERIDGGVTGALRQEAIDRFNAPGAPQFCFLLSTRAGGLGINLATADTVVIF
DSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLG
SKAGSMSKQELDDILKFGTEELFKDEIEFLSPPRMSPLSPIRCPAGDNRDDEGSVIHYDS
SAIERLLDRSQDATDDTDMQNMNEYLSSFKVARYMVREEDKIEEVEREIIKQEECVDPEY
WEKLLRHHYEQQQEDLASKLGKGKRNRKPVNYNDAAQEDQEWHAGISDNQSEYSVGSEEE
DEDFDERPEGSRRQSRRQMRNERDKPLPPLLARVGGNLEVLGFNTRQRKAFLNAVMRWGM
PAQDAFSCQWLVRDLRGKSEKEFKAYVSLFMRHLCEPVADGAETFADGVPREGLCRQPVL
TRIGVMSLVKKKIQEFEHINGRWSLPELKPEMKPEVLRPEVSVSSSSRASSPGGTMKTAT
PTPDPSCTSDNTPCTSKPATPAPSDKLEKNGKDGEKEEEDEEGKASSEPEQDGEKEKNKG
KEEESNKSADSEETPISTKEALQELSPCTTTDKEEKGTKEEKEGKETKTTDTLPALVEEK
KVEEESKEEGSFGETTKQGSEVKHEKPGSVTLSPGEKVEEEKEKDNNKEKDMEKSEEAPV
PTEEPDNMERMERQQPSDVMKEEVKGEKDAGKEVAKEEVAKDALPKPPITPPERRRFMFN
IADGGFTELHTLWQNEERAAISSGKMNEIWHRRHDFWLLAGIVLHGYARWQDIQNDPQFA
IVNEPFKSQANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPVHPAMALN
ARYAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRVP
PIAARLQMSERSILSRLASKGTDTHPPRPSLQDPTPLLRTLGPPSPPPPWESYPWEEPTT
ARCLLDPSYQC
NT seq 6336 nt   +upstreamnt  +downstreamnt
atgtcctctcctctccggtcctgtgaggaagaccagggcatgttggttaattccgaggga
gtagattttgatgaagaagacgaggacgacggagatctagacgagaacgcaagcgacata
aactcgccggcggcgcctcgagaaactgcaacactagccgcgccagtagaggaagaaagg
gaagcatcagacagggccagtctagggaggaagaaacgagggcccaagaagaaggagaca
aagaagaaggaaaaagagaaagagggaaaaccggttaaagccaaaaaacggaaaaagatt
gaaagtgatgtagagagagactcggagcgagagagagattatggtgagaactctgacagc
gcagcgagtgacttctctagtgagaaaaagaagaagaagaaacacaaggaaaagaaggag
aagaaaaccaagaagaagaaaaaagatgatggggacagcacgcatgaggagacaacaaag
ccaatagaacagaaaacgtcggcccagctggctatggactggggtctggaggatgtggat
catacattcactgaagacgattaccgcacactcaccaactacaaagccttcagccagtcc
atgaggcccatgatcgccaagaagaaccctaagatccccatgtccaagatgatgaccatc
ctgggggtcaagtggagggagttcagctctaacaaccccttcaagggctccggtgctgca
gccgtggcagctgcagccgccgctgccgccattgccgtcgccgagcaggtctccgcggca
accccatccccggagccacctccaccccggaagcagccccaacccccacggccgcccccc
ctgccgcctcccccgctccgcaaggccaagaccaaagagggcaaaggccctgggtataag
aagagtcgcagtaagagtcctcgtgttctggctgagaggaagaaggcggtggcagcagca
gtagcggcttcagtagctaaagccaagaagatgtcccccatacgcataaaactgggggcc
ttaggcaacaagagaaagaagagcagctctagtggtgatgatgttgatgaggaggactcg
ctgcaagaggactctagtgtccacagctcctcggtccgctccgacagctcctcccgggtc
aagaagaacaagagaggacgtccggccaagaagaataagaaaatgctggacgagggtgag
gtggagggggatggttatgagacagaccaccaggactactgtgaggtgtgccagcaagga
ggggagatcattctgtgtgacacctgtcctagggcctaccacctggtctgtctggagcct
gagctggagaaggcccccgagggcaagtggagttgcccacactgtgagaaagaggggatc
cagtgggaagcgaaggatgaggactttgaggagtttgaggaggagagtgaggacatggtg
gtaccagaggtacctggggttggactgctggtaggactggaggaagaggaggatgaccac
attgagttctgcagggtctgtaaagatgggggggaactattgtgctgtgacacctgcact
tcctcctaccacatccactgtctcaacccgcccctgcctgagatccccaacggagagtgg
ctgtgtccacgctgcacttgtcctggtatcaagggcagggtgcagaggatcctccactgg
cgatggggcgagccccccgatcctgtacccgtgcctcccgcccccgatacccctcctgat
gctcctccgccaccccccatgaagggcagggctgagagggagttctttgtcaagctgact
ggacagtcctactggcactgtacctggatcactgaactgcagctggagatcttccactcg
gtgatgttccgtaactaccagaggaagacagatatggaggagcctcccagtctggactat
gggtcggggggagaggaggagagtgttaagagtgagaagaggaggctgaaagaccccgac
tatgctgccctggatgacaagttctataaatatggcatcaagcctgaatggatgatggtc
caccgcatcatcaaccacagtatggacaagaaagggatataccactacctggtcaagtgg
agagacctgacctacgaccagtgcacatgggagagagacgatctggagatgccagagttt
gtcattcacaaggccaactactgggcacacagggatgaggtgatgaaggaggccccagac
atgccgaggaggatgaggaggatgaggatggaagagagtgaagacccccacagatcacct
gtcaacgaccctacgataaagtacgaggagcagccagactttgtgacagcgacggggggc
actctgcacctctaccagctggagggactcaactggctgcgtttctcctgggcacagggc
actgacaccatcctggcagacgagatggggctgggcaagactatccagaccatcgtcttc
ctctactcactcttcaaagagggccacactaggggcccattcctggtgagtgcccccctc
tccaccatcattaactgggagagagagtttgagatgtgggcccctgacttctacgtggtg
acctacacaggggacaaggacagcagagccatcatcagagagaacgagctgaccttcgac
gacacggccgtacggggagggaggaaaaccttcaaactgaggagagaagcccctataaag
ttccatgtgctgttgacgtcctatgagctggtgacgatagaccagacctccctgaagtct
atagactgggcctgtctagtggtggacgaagcccaccgcctcaagaacaaccagagcaag
ttcttcagacgtctgaatgactatacgattgaccacaagctgctgctgactggtactcct
ctacagaacaacctggaggagctgtttcacctgctcaatttcctcactcccaaccgtttc
aataatctggaggggttcctggaggagtttgcagacatctccaaggaggaccagatccag
aagctccatgacctgttgggtccccacatgttgaggaggctgaaggctgacgtcttcaag
aacatgccgtccaagactgagctcatcgtacgagtggaactaagccccatgcagaagaaa
tactacaagttgattctgacgaggaactttgaggctctgaactctaaaggaggaggtaac
caggtgtctctactcaacatcatgatggacctgaagaagtgtgccaaccacccctatctc
ttccccgtcgcctccatggaagcccgcaagacggcgagcggagcgtacgagggcatggac
ctcacaaaggcttctgggaaactgactctgttgcagaagatgatgaggaaactgaaggac
cagggacaccgggtgctagtcttctcacagatgactaagatgttggacctgttggaggac
ttcctggactttgagggttataagtacgagaggatcgacggaggagtcacaggagctctg
agacaggaggccatagacaggttcaatgctcctggtgctcctcaattctgtttcctgctg
tccaccagggcagggggtctgggtattaacctggccacagcagacactgttgtcatcttc
gactcagactggaacccccacaatgacatccaggcattcagtcgcgcccaccgcatcggg
caggccaacaaggtgatgatctaccgttttgtgacccgtgccagtgtggaggagcgcatc
acccaggtggcaaagaggaagatgatgctgacccacctggtggtgaggcccggcctgggc
tccaaggctggatccatgtccaaacaggaactggacgacatcctcaagttcggcaccgag
gaactcttcaaggacgagatcgaattcctctcaccaccacgtatgtcccctctctctcct
atacgctgtccagcgggggacaacagggatgatgagggcagtgtgatccactatgacagc
tcagccatcgagagactgctggaccggagccaggacgctacagacgacacagacatgcag
aacatgaacgaatacctcagctccttcaaagtggcccgctacatggttcgagaggaggat
aagattgaggaggtggagcgtgagatcattaagcaggaagagtgtgtggacccagaatac
tgggagaagctgctgagacatcactatgagcaacaacaggaggacctggctagtaaactg
ggcaagggcaagaggaaccgcaagcctgtcaactacaacgacgcagcacaggaggaccaa
gagtggcatgctggtatttcagataaccagtccgagtactctgtgggctctgaggaggag
gatgaagacttcgatgagaggccagaaggttctcgccgacagtcccgtcgccagatgagg
aacgagagagacaagccacttccccccctgttggccagagtagggggaaacttggaggta
ttgggcttcaacacgcgccagaggaaagccttcctaaacgcggtgatgcgttggggcatg
cccgcacaggacgccttctcctgccagtggctggtcagagacctgaggggcaagagtgag
aaggagttcaaggcgtatgtctccctgttcatgcgtcacctgtgtgagcccgtggccgac
ggtgccgagacgtttgccgacggcgtgccgagggagggcctgtgtcggcagcctgtgctc
acccgcatcggggtcatgtccctggtcaagaagaagatccaggagtttgagcacatcaat
gggcggtggagtcttccagaactgaagccagagatgaagccagaggtcctgagaccagag
gtcagtgtgtcttcttcctccagagcctcctcccctggagggaccatgaagaccgctacg
cccacccctgaccccagctgtacctcagacaacaccccctgcacctcaaaaccagctacc
cctgctccgtcggacaaactagagaagaacgggaaagatggagagaaggaagaggaagat
gaggagggtaaggcctcatctgagccagagcaagatggcgagaaggagaagaacaagggg
aaggaggaagagagcaacaagagtgcagactctgaagagactccaatctctaccaaagaa
gcactacaagaattatccccttgcacaacaacagacaaggaggagaagggtacaaaagag
gagaaggaggggaaagaaaccaaaacgactgacacccttccggccctagtggaggagaag
aaagttgaggaggagagtaaggaggaggggtccttcggagaaacaactaagcaagggtcg
gaggtcaaacatgagaaaccaggtagtgtaacactctcacctggagagaaggtggaggag
gagaaagagaaggacaacaacaaggaaaaggacatggagaagagtgaggaggcccctgtc
cccacagaagagccagacaacatggaaagaatggagcgacagcaaccctctgacgtgatg
aaagaggaagtaaaaggtgaaaaggatgctgggaaagaagtggcgaaggaggaggttgcc
aaagatgccttgccaaaaccccccatcaccccccccgagcgacggcgcttcatgttcaac
atcgctgatgggggcttcacggagctgcatacgctgtggcagaacgaggagcgggccgcc
atctcctccgggaagatgaatgagatctggcaccggcgacacgacttctggctgctggcg
ggaattgtacttcatgggtacgcgaggtggcaggacatccagaacgatccccagtttgct
atcgtcaacgagcccttcaagtcgcaggccaacaagggcaacttcctggagatgaagaac
aagttcctggcccgccgcttcaagttattagagcaggccctggtgatagaggaacaactg
agacgggcagcctacctgaatatgacccaggacccggtccaccccgccatggcgttgaac
gcccgttatgccgaggtggagtgtctggccgagtcccaccaacacctcagcaaggagtcc
ctggccgggaacaaaccagccaatgccgtgctgcataaagtgctgaaccagttggaggag
ctgctgagcgacatgaaggctgacgtgacacggctccccgccacgctgtcccgggtcccg
cccatcgccgcacgtctgcagatgtcagagaggagcatcctcagcaggctggccagcaag
ggcactgacacacacccgccccgaccatccctccaggaccctacgccactcctcagaact
ttgggccccccttcacccccacccccctgggagtcttacccatgggaggagccaactaca
gccagatgcctcctggatccttcgtatcagtgttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (15)   
   Pfam (15)   
All databases (33)   

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