KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112265231
Entry
112265231         CDS       T05605                                 
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
  KO
K08131  collagen type IX alpha
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510  Focal adhesion
otw04512  ECM-receptor interaction
otw04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:otw00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    112265231 (col9a1a)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    112265231 (col9a1a)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    112265231 (col9a1a)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:otw00535]
    112265231 (col9a1a)
Proteoglycans [BR:otw00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   112265231 (col9a1a)
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 112265231
NCBI-ProteinID: XP_024298128
Position
LG02:65858997..65872586
AA seq 687 aa
MARARIYRESLLVILLQIVLICSAQRGPVGIRGPTGPPGIAGVPGVDGIDGDRGDDNIIE
GGPGPDGEDGKPGTPGTAGLPGADGATGPVGNLGPDGPPGPKGEPGEAGEVGEIGEGPDG
TDGAAGAQGLVGELGKVGTPGSQGRKGPVGLPGPAGPRGLPGVYKGEDLCPNACPSGLNG
YSGLPGMKGHKGIKGESGEPGKQGHKGEEGDQAGEGQMGAQGLPGQGGPRGITGIMGLKG
DRGPRGTFGDLGPQGIQGGSGDVGQRGVVGETGPNGGQGARGPQGIRGLPGGKGEPGLAG
PDGREGIPGLPASKGITGKVGSPGDTGLQGLPGLPGAYGPKGQSGEMGNSGDPGSVGLMG
SPGKSGERGEQGEVGPVGARGGPGERGVRGPDGPAGAPGPRGGKGDLGLLGLPGPAGLVG
QNGDRGAVGLTGAQGEQGEAGSEGTAGDRGDFGDEGEPGEKGSTGRPGETGNKGPEGGRG
IPGPEGKPGQPGPRGMQGDRGVPGLPGTQGPAGKKPSDTHITQVCMRVMQEQLAQLAASL
RRPEAGISGLPGPPGPPGPAGPSGENGYPGLDGARGLPGLKGPPGLLGRKGLKGDTGDRG
DRGPTARGVKGEPGAPGLPGDHGRAAYGTDGRDGERGPRGVPGIPGVPGPPGRPGLNGYC
ESSQCILPMVASPISAKDSGMKGPNEE
NT seq 2064 nt   +upstreamnt  +downstreamnt
atggctcgcgccaggatatatcgggagtcattgctcgtgattttattgcaaatagtcctt
atttgctccgctcagaggggcccggtcggtatcagaggccccacaggaccccctggtata
gcaggcgtgcctggagttgacggcattgatggagacagaggggatgataacatcatagaa
ggtggccctggtcctgatggagaagatggcaaaccaggaactcccggaactgccggccta
ccgggggcagatggtgccactggacctgttgggaatctcggcccagatgggcctcctgga
ccaaaaggtgaacccggagaggctggggaagtcggggagattggcgaaggacctgatggg
actgatggagcagctggtgcacaagggttggtgggcgagcttggcaaagtcggtaccccg
ggatcacagggcaggaaggggccagttgggcttcccggacctgcagggcccaggggtctt
cctggagtgtataagggggaagacctgtgtcccaatgcctgtccttctggtcttaacgga
tattctggcctcccaggcatgaagggccacaaaggcataaaaggagagtctggtgagcct
ggaaagcaaggacacaagggagaagaaggagaccaggcaggagaaggccagatgggagct
caagggctaccaggccaaggggggcccaggggaataacaggcataatgggcctcaaaggt
gacaggggaccacgtggaacgtttggagaccttggtccccagggaattcagggtggctca
ggtgacgtgggccaaagaggagtagtgggcgagactggaccaaacggtggtcaaggggcc
cgagggccacaaggaataaggggccttccaggggggaaaggggagcctggtctagctggg
cccgatggacgtgaaggaattcccggattgccagcatctaagggtattactgggaaagtt
ggcagtccaggtgatactgggctccaaggacttcctggtttgccaggcgcttatggtcca
aaaggacaaagtggtgaaatgggtaactctggcgacccaggttctgtaggactaatgggg
tctcctgggaaatcaggggaacgtggcgagcagggagaagtaggacctgtcggagcaaga
ggtggaccaggtgaaagaggagtgcgtggaccagacggacctgcaggggcaccaggaccc
aggggaggtaaaggggatctcgggcttcttggtttgcctggccctgccggcctggttgga
cagaatggagacaggggtgcagtcggtttgaccggtgctcaaggagaacaaggagaagcg
ggttcagagggcacagcgggagacagaggggactttggtgacgaaggtgagccaggagag
aaaggatcgacgggcagaccaggagagactggaaacaaagggccggagggcggccggggc
ataccaggcccagagggcaagccgggccaacctggaccacgtggcatgcagggggacaga
ggggtgccaggactgccagggacacagggaccagcggggaaaaaaccaagcgatacacac
atcacacaagtttgcatgagggtaatgcaagagcagctagcccagctagcagccagcctg
aggaggcctgaagcaggcatctctggactgccaggtccccctggcccccctggtcctgca
ggcccctccggagagaacggctacccaggactggacggggccagaggactgccaggtctc
aaaggacctccagggctactgggtcgcaaagggctcaaaggtgacacgggcgacagagga
gacagaggacccacagcaagaggggttaaaggagaacctggagcacccggtctaccaggt
gatcacggtagagccgcctatggtacagacggccgcgacggcgagagagggccacgcggc
gttcccggtattcccggcgttccagggcctcctggtcgtcctggcctcaatggctactgc
gagtcgtcacagtgcatccttcctatggtggcgtcaccgatatcggcaaaagattccggc
atgaaagggccaaatgaggaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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