KEGG   Oscillibacter valericigenes: OBV_35840
Entry
OBV_35840         CDS       T01636                                 
Name
(GenBank) putative nuclease
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
ova  Oscillibacter valericigenes
Pathway
ova03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ova00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    OBV_35840
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ova03400]
    OBV_35840
Enzymes [BR:ova01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     OBV_35840
DNA repair and recombination proteins [BR:ova03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     OBV_35840
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 SH3_13 UvrD_C_2 Viral_helicase1 AAA_11 HHH_5 PIF1 AAA_22 AAA_5 DNA_pol_lambd_f Helicase_RecD UvrD-helicase nSTAND3 AAA_16 UvrD_C HHH MeaB T2SSE AAA_12 HHH_2 NTPase_1 AAA AAA_28 SRP54 HerA_C TsaE CbiA Mg_chelatase AAA_33
Other DBs
NCBI-ProteinID: BAL00783
Position
3378670..3380874
AA seq 734 aa
MDELCCLDGTVHSLIFQNAENGYTVLRLVTEEGELHTVVGCIPCVAPGEHLTVNGVWETH
PQHGEQLKAVELERRLPEDADEIFNYLSSGVCKGVGPATARAIVDRFGVRTLDVLEQEPE
KLTCLRGITEKKAQQIGGSFRQQMGLRRLMAFLAQYELPPALAILLRKLYGDAALDAVRA
NPYLLSADECGVSFSATDEIAMSLGIAADSDERLQAAVIFELNHNENNGHVFLPRDKLVA
ATVQLLNCDGDLAEKALDDLCARGAVVQEQVANVTACYLRRLWAAEVSAVARLWVLLSAD
ADQGRQVDRVIAEIEKAQGITYADQQRQAVALAARTGVLILTGGPGTGKTTTVRGIVALF
QRMGLDVMLAAPTGRAAMRMSELCGGLEAQTIHRLLGVTWNETTRETSFTKCEKEPLEAD
AVIVDEMSMVDVSLFAALLRALRPGTRLVLVGDADQLPSVGAGNVFSDLIRSKKVETVFL
REVFRQAEQSAIIRNAHAVNLGQPPRFVNDQNDFFFMCRRSADRAVSTVVDLCKTRLPEK
MGIPADQIQVLSPTRKGESGTESLNRLLQSALNPPAPDKRQRQWGEKVFREGDRIMQTRN
DYDVVWQRSDGIVGTGIFNGDVGRVVQIDPSGEWLQVNFDDRVSTYTADQLSEIDLAYAM
TVHKAQGSEYRAVILAAMSAAPALMVRGVLYTALTRARELLIVVGDDSAVTAMAENDRRQ
RRYSGLKWRLCNGS
NT seq 2205 nt   +upstreamnt  +downstreamnt
atggatgaactctgctgcctggatggcacggtacatagtcttatctttcaaaacgccgaa
aacggctataccgtcctgcggctggtaacggaggagggagaactgcatacggtggtggga
tgcattccctgcgtggcccccggcgaacacctgacggtgaacggcgtgtgggagacccac
ccccagcacggggagcagttgaaagccgtggagctggaacggcggcttccggaggacgcg
gacgagatcttcaactatctctcttccggcgtatgcaagggcgtgggtcccgccacagcc
cgggccatcgtggatcgcttcggggtgcggacgctggatgtactggaacaggagccggag
aagctcacctgtctgcggggcatcaccgagaaaaaggcccaacagatcggcgggagtttc
cgccagcagatggggcttcggcggctgatggcttttctggcccaatacgaactgcccccg
gctctggcgattctgctgcgaaagctatacggggacgcggcgctggatgcggtgcgcgcc
aacccgtatcttctctccgccgatgaatgcggcgtttccttttcggccacggacgagatt
gccatgagtctgggcatcgccgccgacagcgacgaacggcttcaggcggctgtgatcttc
gagttgaaccacaacgagaacaacggccatgtgtttctcccccgcgacaagctggtcgcc
gccaccgtacagcttttaaactgcgacggagacctggcagaaaaggcgctggacgatctc
tgcgcccggggcgcggtggttcaggagcaggtggccaatgtgaccgcctgctatctccgc
cgcctgtgggcggcggaagtctctgctgtagcccggttgtgggtgcttttatccgcggac
gcggatcaggggcggcaggtggaccgggtcatcgcggaaattgaaaaggcccagggcatt
acctatgccgaccagcagcgtcaggccgtggctctggcggcccggaccggagttttaatc
cttaccggcggccccggcaccggcaagaccaccacggtccggggaatcgtggccctgttc
cagcggatgggactggacgtgatgctggcggcccccaccggccgggcggccatgcggatg
agcgagctgtgcgggggactagaggcccagaccatccaccggctgctgggcgtcacctgg
aacgaaaccacccgggaaacctctttcaccaagtgcgaaaaggagccgttagaggccgac
gcggttattgtggacgagatgagcatggtggacgtgtcattgttcgcggcgcttcttcgc
gccctgcggccaggcacccggctggtgctggtgggagacgcggatcagcttccgtcggtg
ggagcgggaaatgtattttccgacctgattcgcagcaaaaaggtggagaccgtctttttg
agggaagtcttccgtcaggcggagcagtccgccatcatccgcaacgcccacgcggtaaac
ttaggccagccgccccggttcgtcaacgaccagaacgacttctttttcatgtgccgccgc
agtgcggaccgggcggtgagcaccgtggtggatctgtgcaagacccgcctgccggagaag
atgggcattccggcggaccagattcaggtcctctcccccacccgaaagggcgagagcgga
acagaaagcctgaatcgtctgcttcaatcggccctgaatccccccgccccggacaagcgc
cagcgccagtggggcgaaaaggtgttccgggagggagaccgcatcatgcagacccgaaac
gactacgacgtggtgtggcagcggtcggacggtatcgttggcactggcattttcaacggc
gacgtgggccgcgtggtgcagatcgaccccagcggcgagtggcttcaggtgaattttgac
gaccgggtttccacgtataccgccgaccagctctccgagatcgacctggcctacgcaatg
acggtccataaagcccagggcagcgagtaccgggcggtgattctggcggcgatgtccgcc
gctccggcgctgatggttcggggtgtgttgtataccgcgctgacccgggccagagagctt
ttaatcgtggtgggagacgactccgccgttaccgccatggcggaaaatgaccgccgccag
cggcggtattcggggcttaaatggcggctgtgcaacgggtcatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (107)   
   KEGG ORTHOLOGY (1)   
   RefGene (104)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (31)   
   Pfam (31)   
All databases (144)   

Download RDF
DBGET integrated database retrieval system