KEGG   Paracoccus jeotgali: CYR75_08645
Entry
CYR75_08645       CDS       T05276                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
paru  Paracoccus jeotgali
Pathway
paru03030  DNA replication
paru03410  Base excision repair
paru03420  Nucleotide excision repair
paru03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:paru00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CYR75_08645
   03410 Base excision repair
    CYR75_08645
   03420 Nucleotide excision repair
    CYR75_08645
   03430 Mismatch repair
    CYR75_08645
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:paru03032]
    CYR75_08645
   03400 DNA repair and recombination proteins [BR:paru03400]
    CYR75_08645
Enzymes [BR:paru01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CYR75_08645
DNA replication proteins [BR:paru03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CYR75_08645
DNA repair and recombination proteins [BR:paru03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CYR75_08645
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CYR75_08645
   MMR (mismatch excision repair)
    DNA ligase
     CYR75_08645
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CYR75_08645
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH
Other DBs
NCBI-ProteinID: AUM75622
UniProt: A0A2K9MJH5
Position
complement(1775556..1777808)
AA seq 750 aa
MAWAREETAAAELTPAQAEQRIAALSAFVAQANLDYHQQDAPTISDADYDHAKRRLQALE
TAFPDLAQPDSPSAQVGAAPSDAFGKVAHAQRMMSLENAFAEDEIADFVTRIRSFLNLPA
ETQLSFTAEPKIDGLSLSLRYEGGRLTQAATRGDGMIGENVTANALTIPDIPKTLAGDPP
EILEVRGEVYMSHADFAALNASDSGRTFANPRNAAAGSLRQLDPAITAARPLRFFAYAWG
QVSAPFADTQIGAIEALEGFGFQVNPLTRLCHDTTEMLAHYARIEAQRATLGYDIDGVVY
KVNDLGLQARLGFRSTTPRWAIAHKFPAETAWTRLREIEIQVGRTGALSPVARLDPVTVG
GVTVSNATLHNEDYIAGLNSMGERIRGTDIRPGDWVQVYRAGDVIPKIADVDESRRPLNT
APYVFPETCPECGSDAIREPGDAVRRCTGGLICPAQAIEKLKHFVSRAAFDIEGLGARQI
EAFYHDDSLPIRTPADIFTLQARDAAGLARLKNREGWGETSARNLFDAIEARRRIGLARL
IYALGIRHVGEVAASDLARHFTSWSAFAQTVDAAIPAAERQLQADEAVLQERTVAAAEGR
RARISQTREQVLAAEPALPADALAAYAELTSIDGIGDVVAQSLCATFAQTRERAEIEALL
THLQVLDAEAPATEGSPIAGKTIVFTGTLERMTRAEAKARAEALGAKVAGSVSARTDLVV
AGPGAGSKGAKAQALGVEVIDEDAWLRLIE
NT seq 2253 nt   +upstreamnt  +downstreamnt
atggcatgggcgcgtgaggaaaccgccgctgctgagctgacgccggctcaggcagagcag
cgcatcgcggcgctgtcggcctttgtggcgcaggccaatctggactatcaccagcaggac
gcgccgacgatcagcgacgccgattacgaccacgccaaacgccggttgcaggcgctcgaa
accgcgtttccggatctcgcgcagcccgacagcccctcggcgcaggtcggggccgcgccc
tctgacgccttcggcaaggtcgcccatgcgcagcgcatgatgtcgctggagaacgccttt
gccgaggacgagatcgccgatttcgtcacccgcatccgcagcttcctgaacctgccggcc
gagacccagctaagcttcaccgccgagccaaagatcgacggcctctcgctctcgctgcgt
tacgagggcgggcggctgacccaggccgccacccgtggcgacggcatgatcggcgagaac
gtgaccgccaacgcactgaccattccggatatccccaagaccctcgccggcgatccgccc
gaaatcctcgaggtccggggcgaggtctatatgagccacgccgattttgccgcgctcaac
gccagcgacagcggccggaccttcgccaatccgcgcaatgccgcggcgggctcgctgcgc
cagcttgatccggccatcaccgccgcccgtccgctgcgctttttcgcctatgcctggggg
caggtcagcgcgccctttgccgacacccagatcggcgccatcgaggcgttggagggtttc
ggctttcaggtcaacccgctgacccggctctgccacgacacgaccgagatgctggcccat
tacgcccggatcgaggcgcaacgtgcgacgcttggctatgacatcgacggcgtggtctac
aaggtgaacgaccttgggctgcaggcccggctgggctttcgctcgaccacgccgcgttgg
gccatcgcccacaagttcccggccgaaaccgcctggacccggctgcgcgagatcgagatc
caggtcggccgcaccggcgcgctctccccggtcgcgcggctcgatccggtgacggtgggg
ggcgtgacggtctcgaacgcgaccttgcataatgaggattacatcgccgggctgaacagc
atgggcgagcggatccgggggaccgatatccgccccggcgactgggtgcaggtctatcgc
gccggcgacgtgatccccaagattgccgatgtcgacgagtcccgccgaccgctgaatacc
gccccctatgtctttcccgagacctgcccggaatgcggttccgacgcgatccgagagccg
ggcgatgccgtgcggcgctgcacgggcgggttgatatgtcccgcgcaggcgattgaaaaa
ctgaagcatttcgtcagccgcgcggctttcgacatcgaggggctgggcgcccgccagatc
gaggcgttctatcacgacgacagcctgccgatccgcacccccgccgacatcttcaccctg
caggcacgcgacgccgccgggctggcgcggctgaagaatcgcgagggctggggcgagacc
tcggcccgcaacctcttcgacgccatcgaggcgcgccggcggatcggtctggcgcggctg
atctatgcgttgggcatcaggcatgtgggcgaggtcgcggccagcgatctggcccggcac
ttcacctcgtggagcgcgtttgcgcagaccgtcgatgccgcgatccccgccgccgagcgt
cagcttcaggccgatgaggcggttctgcaggaacgcaccgtcgccgccgccgagggccgt
cgtgcgcggatatcgcagacccgcgagcaggtgctggccgccgagccggcgctgccggcg
gacgcgttggcggcctatgcagagctgacctcgatcgacgggatcggcgatgtcgtggcc
caatcgctgtgcgcgaccttcgcccagacccgcgaacgggccgagatcgaggcgctgctg
acgcatctgcaggtcctcgacgccgaggccccggcgaccgagggcagccccatcgccggc
aagaccatcgtctttaccggcacgctggaacgcatgacccgcgccgaggccaaggcccgg
gccgaggcgctgggtgccaaggtcgcggggtcggtctcggccaggaccgatctggtcgtc
gcggggccgggggcgggatccaagggcgcgaaggcgcaggctttgggggtcgaggtgatt
gacgaggacgcatggctgcgcctgatcgaatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (27)   

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