KEGG   PATHWAY: cal03040
Entry
cal03040                    Pathway                                
Name
Spliceosome - Candida albicans
Description
After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.
Class
Genetic Information Processing; Transcription
Pathway map
cal03040  Spliceosome
cal03040

Other DBs
GO: 0005681
Organism
Candida albicans [GN:cal]
Gene
CAALFM_C406180CA  uncharacterized ncRNA [KO:K14278]
CAALFM_CR00500CA  uncharacterized ncRNA [KO:K14279]
CAALFM_C305500WA  SNR6; uncharacterized ncRNA [KO:K14280]
CAALFM_C306720WA  PRP5; DEAD-box RNA helicase [KO:K12811] [EC:5.6.2.7]
CAALFM_C400220CA  SUB2; ATP-dependent RNA helicase [KO:K12812] [EC:5.6.2.7]
CAALFM_C304230WA  CaO19.5865; DEAH-box RNA-dependent ATPase [KO:K12814] [EC:5.6.2.6]
CAALFM_CR02590CA  CaO19.2818; DEAH-box RNA helicase [KO:K12815] [EC:5.6.2.6]
CAALFM_C112750CA  CaO19.6347; hypothetical protein [KO:K12816]
CAALFM_C200200WA  CaO19.2112; mRNA splicing protein [KO:K12817]
CAALFM_C505370CA  PRP22; DEAH-box ATP-dependent RNA helicase [KO:K12818] [EC:5.6.2.6]
CAALFM_C306770WA  SLU7; mRNA splicing protein [KO:K12819]
CAALFM_C301560WA  CaO19.1687; DEAH-box ATP-dependent RNA helicase [KO:K12820] [EC:5.6.2.6]
CAALFM_CR07510WA  CaO19.2621; mRNA splicing protein [KO:K11086]
CAALFM_CR10820WA  CaO19.7673; mRNA splicing protein [KO:K11087]
CAALFM_C206240WA  SMD2; mRNA splicing protein [KO:K11096]
CAALFM_C501510WA  SMD3; mRNA splicing protein [KO:K11088]
CAALFM_C600530CA  mRNA splicing protein [KO:K11097]
CAALFM_C503110CA  mRNA splicing protein [KO:K11098]
CAALFM_C203880CA  mRNA splicing protein [KO:K11099]
CAALFM_C205540CA  CaO19.6866; U1 snRNP complex subunit [KO:K11093]
CAALFM_C206300WA  CaO19.5492; hypothetical protein [KO:K11095]
CAALFM_CR01050CA  CaO19.3250; hypothetical protein [KO:K12821]
CAALFM_CR02530WA  DBP2; DEAD-box ATP-dependent RNA helicase [KO:K12823] [EC:5.6.2.7]
CAALFM_C405750CA  LEA1; U2 snRNP complex subunit [KO:K11092]
CAALFM_C305940CA  CaO19.7375; hypothetical protein [KO:K11094]
CAALFM_C401280CA  CaO19.4659; hypothetical protein [KO:K12825]
CAALFM_C108660CA  CaO19.4724; hypothetical protein [KO:K12826]
CAALFM_C501930WA  CaO19.3178; SF3a splicing factor complex subunit [KO:K12827]
CAALFM_C403150WA  CaO19.2675; mRNA-binding U2 snRNP complex subunit [KO:K12828]
CAALFM_CR10060WA  CaO19.7581; U2 snRNP complex subunit [KO:K12829]
CAALFM_C300660WA  CaO19.5391; U2 snRNP complex subunit [KO:K12830]
CAALFM_C207060WA  CaO19.2261; U2 snRNP complex subunit [KO:K12831]
CAALFM_C111680CA  hypothetical protein [KO:K12832]
CAALFM_C305540CA  CaO19.6989; hypothetical protein [KO:K12833]
CAALFM_C206790WA  CaO19.2230; U2 snRNP complex subunit [KO:K12834]
CAALFM_C104990CA  CaO19.53; hypothetical protein [KO:K12836]
CAALFM_C105090WA  TRY2; Try2p [KO:K12836]
CAALFM_C202770WA  CaO19.5828; hypothetical protein [KO:K12837]
CAALFM_CR04260WA  SNP3; Sm-like protein [KO:K12621]
CAALFM_CR07330WA  SMX4; U4/U6-U5 snRNP complex subunit [KO:K12622]
CAALFM_C702510WA  U6 snRNA complex subunit [KO:K12623]
CAALFM_C114410WA  CaO19.7256; RNA-binding protein [KO:K12624]
CAALFM_CR00240WA  LSM6; U4/U6-U5 snRNP complex subunit [KO:K12625]
CAALFM_C503400CA  Sm-like protein [KO:K12626]
CAALFM_C502810WA  U4/U6-U5 snRNP complex subunit [KO:K12627]
CAALFM_C203200WA  PRP3; U4/U6-U5 snRNP complex subunit [KO:K12843]
CAALFM_CR09480WA  CaO19.7343; U4/U6-U5 snRNP complex subunit [KO:K12662]
CAALFM_C206650CA  CaO19.82; U4/U6-U5 snRNP complex subunit [KO:K12844]
CAALFM_C304380CA  CaO19.5885; RNA binding protein [KO:K12845]
CAALFM_C114470WA  CaO19.7265; mRNA splicing protein [KO:K12847]
CAALFM_C503010WA  CaO19.4326; U4/U6-U5 snRNP complex subunit [KO:K11984]
CAALFM_C202300WA  CaO19.1548; U4/U6-U5 snRNP complex subunit [KO:K12848]
CAALFM_C111130WA  FGR16; U4/U6-U5 snRNP complex subunit [KO:K12851]
CAALFM_C204640CA  SNU114; U5 snRNP GTPase [KO:K12852]
CAALFM_C407100CA  CaO19.3098; ATP-dependent RNA helicase [KO:K12854] [EC:5.6.2.6]
CAALFM_C112670CA  CaO19.6356; U4/U6-U5 snRNP complex subunit [KO:K12855]
CAALFM_CR08660WA  PRP8; U4/U6-U5 snRNP complex subunit [KO:K12856]
CAALFM_C111300CA  CaO19.672; mRNA splicing protein [KO:K12858] [EC:5.6.2.7]
CAALFM_C500920WA  CaO19.1975; U4/U6-U5 snRNP complex subunit [KO:K12859]
CAALFM_C307480WA  CaO19.6740; E3 ubiquitin-protein ligase [KO:K10599] [EC:2.3.2.27]
CAALFM_C109370WA  CEF1; Cef1p [KO:K12860]
CAALFM_C300500CA  CaO19.5413; mRNA splicing protein [KO:K12862]
CAALFM_C112630CA  CaO19.6360; U2-type spliceosomal complex subunit [KO:K12863]
CAALFM_C113480WA  HSP70; Hsp70 family chaperone [KO:K03283]
CAALFM_CR08090WA  SSB1; Hsp70 family ATPase [KO:K03283]
CAALFM_C104300CA  SSA2; Hsp70 family chaperone [KO:K03283]
CAALFM_C602440CA  PRP45; mRNA splicing protein [KO:K06063]
CAALFM_C406410WA  CaO19.2893; mRNA splicing protein [KO:K12867]
CAALFM_C704290WA  CaO19.7139; hypothetical protein [KO:K12868]
CAALFM_C303330CA  CaO19.332; hypothetical protein [KO:K12869]
CAALFM_C703530CA  ISY1; Isy1p [KO:K12870]
CAALFM_C210810WA  CaO19.5364; hypothetical protein [KO:K12872]
CAALFM_C109880CA  BUD31; U2 snRNP complex subunit [KO:K12873]
CAALFM_C105640CA  FAL1; ATP-dependent RNA helicase [KO:K13025] [EC:5.6.2.7]
CAALFM_C204870CA  CaO19.4123; hypothetical protein [KO:K12879]
CAALFM_C500840WA  CaO19.587; hypothetical protein [KO:K12880]
CAALFM_C304590WA  RNA-binding protein [KO:K12881]
CAALFM_C110190WA  CaO19.4888; hypothetical protein [KO:K12881]
CAALFM_C108420WA  GCR3; Gcr3p [KO:K12882]
CAALFM_C104790WA  CaO19.763; hypothetical protein [KO:K12883]
Reference
  Authors
Wahl MC, Will CL, Luhrmann R
  Title
The spliceosome: design principles of a dynamic RNP machine.
  Journal
Cell 136:701-18 (2009)
DOI:10.1016/j.cell.2009.02.009
Reference
  Authors
Morris DP, Greenleaf AL
  Title
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.
  Journal
J Biol Chem 275:39935-43 (2000)
DOI:10.1074/jbc.M004118200
Reference
  Authors
Chen YI, Moore RE, Ge HY, Young MK, Lee TD, Stevens SW
  Title
Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.
  Journal
Nucleic Acids Res 35:3928-44 (2007)
DOI:10.1093/nar/gkm347
Reference
  Authors
Ritchie DB, Schellenberg MJ, MacMillan AM
  Title
Spliceosome structure: piece by piece.
  Journal
Biochim Biophys Acta 1789:624-33 (2009)
DOI:10.1016/j.bbagrm.2009.08.010
KO pathway
ko03040   

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