KEGG   PATHWAY: egr02010
Entry
egr02010                    Pathway                                
Name
ABC transporters - Eucalyptus grandis (rose gum)
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
egr02010  ABC transporters
egr02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Eucalyptus grandis (rose gum) [GN:egr]
Gene
104444880  ABC transporter A family member 1 [KO:K05643]
104449215  ABC transporter B family member 28 [KO:K05657]
104416962  LOW QUALITY PROTEIN: putative multidrug resistance protein [KO:K05658] [EC:7.6.2.2]
104419318  ABC transporter B family member 15 isoform X1 [KO:K05658] [EC:7.6.2.2]
104419319  ABC transporter B family member 15 [KO:K05658] [EC:7.6.2.2]
104420660  ABC transporter B family member 15 [KO:K05658] [EC:7.6.2.2]
104420662  LOW QUALITY PROTEIN: ABC transporter B family member 15-like [KO:K05658] [EC:7.6.2.2]
104420927  ABC transporter B family member 20 isoform X1 [KO:K05658] [EC:7.6.2.2]
104421894  ABC transporter B family member 19 [KO:K05658] [EC:7.6.2.2]
104448349  putative multidrug resistance protein [KO:K05658] [EC:7.6.2.2]
104426339  ABC transporter B family member 1 isoform X1 [KO:K05658] [EC:7.6.2.2]
104434369  ABC transporter B family member 11 [KO:K05658] [EC:7.6.2.2]
104434386  LOW QUALITY PROTEIN: ABC transporter B family member 11 [KO:K05658] [EC:7.6.2.2]
104434397  LOW QUALITY PROTEIN: ABC transporter B family member 4 [KO:K05658] [EC:7.6.2.2]
104443530  ABC transporter B family member 2 [KO:K05658] [EC:7.6.2.2]
104424627  ABC transporter B family member 21 [KO:K05658] [EC:7.6.2.2]
104440832  ABC transporter B family member 9 [KO:K05658] [EC:7.6.2.2]
104442554  ABC transporter B family member 9 [KO:K05658] [EC:7.6.2.2]
104442555  ABC transporter B family member 9 [KO:K05658] [EC:7.6.2.2]
104454268  ABC transporter B family member 20 isoform X1 [KO:K05658] [EC:7.6.2.2]
104456649  LOW QUALITY PROTEIN: ABC transporter B family member 13 [KO:K05658] [EC:7.6.2.2]
104422576  ABC transporter B family member 15 [KO:K05658] [EC:7.6.2.2]
104424019  LOW QUALITY PROTEIN: ABC transporter B family member 19 [KO:K05658] [EC:7.6.2.2]
104424622  ABC transporter B family member 4 [KO:K05658] [EC:7.6.2.2]
104424624  LOW QUALITY PROTEIN: ABC transporter B family member 4 [KO:K05658] [EC:7.6.2.2]
104424625  LOW QUALITY PROTEIN: ABC transporter B family member 21 [KO:K05658] [EC:7.6.2.2]
104436570  LOW QUALITY PROTEIN: putative ABC transporter B family member 8 [KO:K05658] [EC:7.6.2.2]
104430550  LOW QUALITY PROTEIN: ABC transporter B family member 15-like [KO:K05658] [EC:7.6.2.2]
104419322  ABC transporter B family member 15-like [KO:K05658] [EC:7.6.2.2]
104419320  LOW QUALITY PROTEIN: ABC transporter B family member 15-like [KO:K05658] [EC:7.6.2.2]
120288840  LOW QUALITY PROTEIN: ABC transporter B family member 19-like [KO:K05658] [EC:7.6.2.2]
120289668  LOW QUALITY PROTEIN: ABC transporter B family member 19-like [KO:K05658] [EC:7.6.2.2]
104434083  ABC transporter B family member 11-like isoform X1 [KO:K05658] [EC:7.6.2.2]
120294712  LOW QUALITY PROTEIN: ABC transporter B family member 13-like [KO:K05658] [EC:7.6.2.2]
104420663  LOW QUALITY PROTEIN: ABC transporter B family member 15-like [KO:K05658] [EC:7.6.2.2]
104434148  ABC transporter B family member 25, mitochondrial [KO:K05662]
104449144  ABC transporter C family member 3 [KO:K05666]
104447898  ABC transporter C family member 10 [KO:K05666]
104447877  ABC transporter C family member 10 [KO:K05666]
104450628  ABC transporter C family member 13 isoform X1 [KO:K05674]
104415797  LOW QUALITY PROTEIN: ABC transporter D family member 1 [KO:K25819] [EC:7.6.2.4]
104451946  ABC transporter G family member 25 [KO:K05681]
104425555  LOW QUALITY PROTEIN: ABC transporter G family member 22 [KO:K05681]
104442320  ABC transporter G family member 14 [KO:K05681]
104423368  LOW QUALITY PROTEIN: ABC transporter G family member 9 [KO:K05681]
104453835  ABC transporter G family member 21 [KO:K05681]
104455829  LOW QUALITY PROTEIN: ABC transporter G family member 6 [KO:K05681]
104416937  ABC transporter G family member STR2 [KO:K05681]
104418105  ABC transporter G family member 5 [KO:K05681]
104421468  ABC transporter G family member 23 [KO:K05681]
104436132  ABC transporter G family member 20 [KO:K05681]
104448008  ABC transporter G family member 4 [KO:K05681]
104450084  ABC transporter G family member 10 [KO:K05681]
104454158  LOW QUALITY PROTEIN: ABC transporter G family member 6 [KO:K05681]
104456351  ABC transporter G family member STR [KO:K05681]
104421499  ABC transporter G family member 15 [KO:K05681]
104456449  ABC transporter G family member 11 [KO:K05681]
104421497  ABC transporter G family member 15 [KO:K05681]
104425895  ABC transporter G family member 11 [KO:K05681]
104419893  ABC transporter G family member 1 [KO:K05681]
104419894  ABC transporter G family member 1 [KO:K05681]
104420283  LOW QUALITY PROTEIN: ABC transporter G family member 1 [KO:K05681]
104419892  ABC transporter G family member 1 [KO:K05681]
104433190  ABC transporter G family member 7 [KO:K05681]
104450409  ABC transporter G family member 26 [KO:K05681]
104420285  ABC transporter G family member 1 [KO:K05681]
104420284  ABC transporter G family member 1-like [KO:K05681]
104455828  ABC transporter G family member 6 [KO:K05681]
104427083  pleiotropic drug resistance protein 3 [KO:K08711]
104454112  pleiotropic drug resistance protein 2 [KO:K08711]
104437705  pleiotropic drug resistance protein 1 [KO:K08711]
104421275  LOW QUALITY PROTEIN: pleiotropic drug resistance protein 2 [KO:K08711]
104452026  ABC transporter G family member 29 [KO:K08711]
104449916  LOW QUALITY PROTEIN: ABC transporter G family member 29 [KO:K08711]
104438478  ABC transporter G family member 32 [KO:K08711]
104438307  pleiotropic drug resistance protein 2 [KO:K08711]
104423078  ABC transporter G family member 35 [KO:K08711]
104439099  LOW QUALITY PROTEIN: ABC transporter G family member 38 [KO:K08711]
104425660  pleiotropic drug resistance protein 2 isoform X1 [KO:K08711]
104414180  LOW QUALITY PROTEIN: pleiotropic drug resistance protein 1 [KO:K08711]
104437706  pleiotropic drug resistance protein 1 isoform X3 [KO:K08711]
104449481  pleiotropic drug resistance protein 1 [KO:K08711]
104421273  LOW QUALITY PROTEIN: pleiotropic drug resistance protein 2 [KO:K08711]
104431312  pleiotropic drug resistance protein 3 isoform X1 [KO:K08711]
104431374  LOW QUALITY PROTEIN: pleiotropic drug resistance protein 3 [KO:K08711]
104423163  pleiotropic drug resistance protein 1 [KO:K08711]
104431301  LOW QUALITY PROTEIN: pleiotropic drug resistance protein 3 [KO:K08711]
104415289  pleiotropic drug resistance protein 3 [KO:K08711]
104431364  LOW QUALITY PROTEIN: pleiotropic drug resistance protein 3 [KO:K08711]
104423162  pleiotropic drug resistance protein 1 [KO:K08711]
104421274  LOW QUALITY PROTEIN: pleiotropic drug resistance protein 2 [KO:K08711]
104422390  LOW QUALITY PROTEIN: ABC transporter G family member 31 [KO:K08711]
104423403  LOW QUALITY PROTEIN: pleiotropic drug resistance protein 2 [KO:K08711]
104417038  LOW QUALITY PROTEIN: pleiotropic drug resistance protein 1 [KO:K08711]
120289167  pleiotropic drug resistance protein 2-like [KO:K08711]
104414187  LOW QUALITY PROTEIN: ABC transporter G family member 40 [KO:K08711]
104437707  LOW QUALITY PROTEIN: pleiotropic drug resistance protein 1-like [KO:K08711]
120292201  LOW QUALITY PROTEIN: ABC transporter G family member 38-like [KO:K08711]
104431184  LOW QUALITY PROTEIN: ABC transporter G family member 31-like [KO:K08711]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

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