KEGG   PATHWAY: smm04144
Entry
smm04144                    Pathway                                
Name
Endocytosis - Schistosoma mansoni
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
Pathway map
smm04144  Endocytosis
smm04144

Other DBs
GO: 0006897
Organism
Schistosoma mansoni [GN:smm]
Gene
Smp_000730  ADP-ribosylation factor family [KO:K07941]
Smp_124970  phosphatidylinositol-4-phosphate 5-kinase type I, putative [KO:K00889] [EC:2.7.1.68]
Smp_151420  phospholipase D [KO:K01115] [EC:3.1.4.4]
Smp_044920  dynamin, putative [KO:K01528] [EC:3.6.5.5]
Smp_129050  putative dynamin [KO:K01528] [EC:3.6.5.5]
Smp_051080  putative clathrin light chain [KO:K04644]
Smp_154420.1  putative clathrin heavy chain [KO:K04646]
Smp_074020  putative alpha adaptin carboxyl-terminal domain [KO:K11824]
Smp_143060  putative clathrin coat assembly protein AP17 [KO:K11827]
Smp_049760  TGF-beta receptor, putative [KO:K04674] [EC:2.7.11.30]
Smp_165470  putative receptor Tyrosine Kinase [KO:K04361] [EC:2.7.10.1]
Smp_093930.1  putative receptor Tyrosine Kinase [KO:K04361] [EC:2.7.10.1]
Smp_152680  Receptor Tyrosine Kinase,putative [KO:K04361] [EC:2.7.10.1]
Smp_005020  putative cbl [KO:K04707] [EC:2.3.2.27]
Smp_122030  sh3-containing grb2-like protein 1 (endophilin II) [KO:K11247]
Smp_036990  sh3-containing grb2-like protein 3 (endophilin III) [KO:K11247]
Smp_003230  sh3 domain grb2-like protein B1 (endophilin B1) [KO:K11248]
Smp_031100  putative liquid facets [KO:K12471]
Smp_171650  eps-15-related [KO:K12472]
Smp_207020  putative e3 ubiquitin-protein ligase nedd-4 [KO:K10591] [EC:2.3.2.26]
Smp_123180  nedd-4-like E3 ubiquitin-protein ligase [KO:K05633] [EC:2.3.2.26]
Smp_165260  nedd-4-like E3 ubiquitin-protein ligase [KO:K05633] [EC:2.3.2.26]
Smp_130580  hypothetical protein [KO:K12475]
Smp_210820  serine/threonine kinase [KO:K00910] [EC:2.7.11.15]
Smp_123640  serine/threonine kinase [KO:K08291] [EC:2.7.11.16]
Smp_176980  putative beta-arrestin 1 [KO:K04439]
Smp_126080  putative beta-arrestin 1 [KO:K04439]
Smp_122900  putative beta-arrestin 1 [KO:K04439]
Smp_152290  putative beta-arrestin 1 [KO:K04439]
Smp_082780  putative wiskott-aldrich syndrome protein [KO:K23612]
Smp_101290.1  actin-related protein 2, arp2 [KO:K17260]
Smp_210740  prolyl oligopeptidase (S09 family) [KO:K18584]
Smp_134400  arp2/3 complex subunit 41-related [KO:K05757]
Smp_186700  arp2/3 complex subunit 41-related [KO:K05757]
Smp_010690  putative arp2/3 [KO:K05758]
Smp_127830  putative arp2/3 [KO:K05758]
Smp_032310  putative arp2/3 complex 21 kD subunit [KO:K05756]
Smp_160770.1  putative arp2/3 complex 20 kD subunit [KO:K05755]
Smp_073720.1  putative arp2/3 complex 16 kD subunit (P16-arc) [KO:K05754]
Smp_106930  putative heat shock protein 70 [KO:K03283]
Smp_118830  f-actin capping protein alpha, putative [KO:K10364]
Smp_186650  putative f-actin capping protein beta subunit [KO:K10365]
Smp_050350.1  hypothetical protein [KO:K18467]
Smp_210770  putative vacuolar protein sorting 26, vps26 [KO:K18466]
Smp_173330  putative vacuolar sorting protein [KO:K18468]
Smp_091730  putative sorting nexin [KO:K17918]
Smp_044250  subfamily M67C unassigned peptidase (M67 family) [KO:K11866] [EC:3.4.19.12]
Smp_067140  putative rab9 and [KO:K07897]
Smp_093740.1  putative hepatocyte growth factor-regulated tyrosine kinase substrate (hgs) [KO:K12182]
Smp_126520  putative signal transducing adapter molecule (stam) [KO:K04705]
Smp_193790  tsg101-related [KO:K12183]
Smp_067540  hypothetical protein [KO:K12184]
Smp_048940  williams-beuren syndrome critical region protein-related [KO:K12185]
Smp_198850  hypothetical protein [KO:K12188]
Smp_053030  hypothetical protein [KO:K12190]
Smp_097620  hypothetical protein [KO:K12189]
Smp_053040  snf7-related [KO:K12195]
Smp_045710.1  snf7-related [KO:K12194]
Smp_032150  neuroendocrine differentiation factor, putative [KO:K12193]
Smp_016390.1  snf7-like protein (bc-2) (putative breast adenocarcinoma marker) [KO:K12191]
Smp_070030  snf7-related [KO:K12192]
Smp_035110  hypothetical protein [KO:K15053]
Smp_025510  putative skd/vacuolar sorting [KO:K12196]
Smp_094820  hypothetical protein [KO:K12199]
Smp_055880.1  chmp1 (chromatin modifying protein) (charged multivesicular body protein), putative [KO:K12197]
Smp_079000  vacuolar assembly/sorting protein D1D2-like protein [KO:K12197]
Smp_010090  snf7-related [KO:K12198]
Smp_057650  protein kiaa0174, putative [KO:K19476]
Smp_087620  putative programmed cell death 6-interacting protein [KO:K12200]
Smp_087580  pcd6 interacting protein-related [KO:K12200]
Smp_042550  sortingnexin-related [KO:K17917]
Smp_003140.1  putative sorting nexin [KO:K17920]
Smp_006920  tyrosine kinase [KO:K05704] [EC:2.7.10.2]
Smp_081190  putative rho3 GTPase [KO:K04513]
Smp_104110  putative rho GTPase [KO:K04513]
Smp_171970  putative hypothetical protein [KO:K12478]
Smp_040570.1  putative rab5 [KO:K07889]
Smp_126170  hypothetical protein [KO:K12480]
Smp_052640  hypothetical protein [KO:K12481]
Smp_128440  putative run and fyve domain containing protein [KO:K12482]
Smp_065180  eh domain containing/past-1-related [KO:K12483]
Smp_019100  eh domain containing/past-1-related [KO:K12483]
Smp_104520  vacuolar protein sorting-associated, putative [KO:K12479]
Smp_014660.1  rab-related GTP-binding protein [KO:K07903]
Smp_104670  rab15, 13, 10, 1, 35, 5, and, putative [KO:K07901]
Smp_132330  putative rab15, 13, 10, 1, 35, 5, and [KO:K07876]
Smp_104310  rab11, putative [KO:K07904]
Smp_005670  rab11, putative [KO:K07904]
Smp_001040  kinesin heavy chain [KO:K10396]
Smp_169430  cell polarity protein [KO:K04237]
Smp_048550  synapse formation protein [KO:K06093]
Smp_096310  serine/threonine kinase [KO:K06069] [EC:2.7.11.13]
Smp_082810.1  cell polarity protein [KO:K04393]
Smp_142850  putative smap1 [KO:K12486]
Smp_138500  centaurin/arf-related [KO:K05737]
Smp_196880  putative development and differentiation-enhancing factor, ddef [KO:K12488]
Smp_000670  CENTB5 protein [KO:K12489]
Smp_198010  centaurin/arf-related [KO:K12491]
Smp_052420  centaurin/arf-related [KO:K12491]
Smp_152370  putative arf gtpase-activating protein [KO:K12492]
Smp_179610  putative arf gtpase-activating protein [KO:K12493]
Smp_147020  putative arf6 guanine nucleotide exchange factor [KO:K12494]
Smp_016380  cytohesin-related guanine nucleotide-exchange protein [KO:K12495]
Smp_124660  putative guanyl-nucleotide exchange factor [KO:K12495]
Smp_034660  cytohesin-related guanine nucleotide-exchange protein [KO:K12495]
Smp_143390  guanyl-nucleotide exchange factor, putative [KO:K18441]
Smp_135280  putative brefeldin A-inhibited guanine nucleotide-exchange protein [KO:K18442]
Smp_101280  golgi-specific brefeldin A-resistance factor,putative [KO:K18443]
Smp_032180  ADP-ribosylation factor, arf, putative [KO:K07937]
Smp_088650  putative adp-ribosylation factor, arf [KO:K07939]
Compound
C00035  GDP
C00044  GTP
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637  1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
C11556  1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
  Authors
Acconcia F, Sigismund S, Polo S
  Title
Ubiquitin in trafficking: the network at work.
  Journal
Exp Cell Res 315:1610-8 (2009)
DOI:10.1016/j.yexcr.2008.10.014
Reference
  Authors
Donaldson JG, Porat-Shliom N, Cohen LA
  Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
  Journal
Cell Signal 21:1-6 (2009)
DOI:10.1016/j.cellsig.2008.06.020
Reference
  Authors
Sorkin A
  Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
  Journal
Curr Opin Cell Biol 16:392-9 (2004)
DOI:10.1016/j.ceb.2004.06.001
Reference
  Authors
Raiborg C, Stenmark H
  Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
  Journal
Nature 458:445-52 (2009)
DOI:10.1038/nature07961
Reference
  Authors
Scita G, Di Fiore PP
  Title
The endocytic matrix.
  Journal
Nature 463:464-73 (2010)
DOI:10.1038/nature08910
Reference
  Authors
Le Roy C, Wrana JL
  Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
  Journal
Nat Rev Mol Cell Biol 6:112-26 (2005)
DOI:10.1038/nrm1571
Reference
  Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
  Title
The early endosome: a busy sorting station for proteins at the crossroads.
  Journal
Histol Histopathol 25:99-112 (2010)
DOI:10.14670/HH-25.99
Reference
  Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
  Title
Viral entry, lipid rafts and caveosomes.
  Journal
Ann Med 37:394-403 (2005)
DOI:10.1080/07853890510011976
Reference
  Authors
Grant BD, Donaldson JG
  Title
Pathways and mechanisms of endocytic recycling.
  Journal
Nat Rev Mol Cell Biol 10:597-608 (2009)
DOI:10.1038/nrm2755
Reference
  Authors
Cullen PJ, Korswagen HC
  Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
  Journal
Nat Cell Biol 14:29-37 (2012)
DOI:10.1038/ncb2374
Related
pathway
smm04070  Phosphatidylinositol signaling system
smm04130  SNARE interactions in vesicular transport
smm04142  Lysosome
smm04350  TGF-beta signaling pathway
KO pathway
ko04144   

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