KEGG T06156: Pdca

Pseudonocardia autotrophica: Pdca_26570

Entry

Pdca_26570        CDS       T06156

Name

(GenBank) hypothetical protein

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

paut Pseudonocardia autotrophica

Pathway

paut03440

Homologous recombination

Brite

KEGG Orthology (KO) [BR:paut00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Pdca_26570
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:paut03400]
    Pdca_26570
Enzymes [BR:paut01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     Pdca_26570
DNA repair and recombination proteins [BR:paut03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Pdca_26570

SSDB

Motif

Pfam:

AAA_19 AAA_30 UvrD_C_2 Viral_helicase1 AAA_11 SH3_13 AAA_22 Helicase_RecD UvrD-helicase PhoH AAA_16 RecD_N AAA_28 Mg_chelatase

Other DBs

NCBI-ProteinID:

BBG01448

Position

complement(2789119..2791287)

AA seq 722 aa
MTTGATSGLTAGATAVPERDPYGPRAARTAAGVLAVFNEADVLAPGDVHVARRLAGLGGR
GDPVGAADPAAAEPEPVVLAAALAVRAIRNGSVCVDLGSVASTTAGEGEITVDVSGLPWP
EPGTWRAACAASPLVADGDAAPAGRPLRLLGDLLYLERYWQEEELVRREFVARSGPVAQV
DPQRLRTALDRLLDDPGAERQRLAAAVAALRPVSVIAGGPGTGKTTTVARLLGVLHDLHS
DRPGLPPLRVALAAPTGKAAARLTQSVAEAVTHMPPDDRSAVEGTVASTLHRLLGSRGAS
GRFRHHRGNRLPHDVVVVDETSMVSLTMMARLLEAVRPDARLVLVGDPEQLASVEAGAVL
GDLAEASGRTEPELQEALEACGAFRAERPVRRTGDLGAPDPGAETSGTGTEASRASARAE
ADASSAEAGAGDSGADASGADGSGADASGAEATASAVAGEPVVVRNGVVRLQRNWRFSGA
IAAFASAVQSGDGDAAMALLAGGTAELSFVAVDPAEVGADGLTPLRSQVVGAAVDLIGAA
EEGNVEQALRVLDDHRLLCGHRRGPYGVARWTAEIERWLSAARPGYDAQAPWFPGRPLLV
TANDYDLGLFNGDTGVVVRTEDGHRAVFVREGRPAAFEPARLGGVGTVYAMTVHRSQGSQ
FRRVTVVLPPADSPLMTRELLYTAVTRAKESVRIIGTEAAVRAAIARPAGRASGLRLRLA
TP

NT seq 2169 nt +upstreamnt +downstreamnt
atgacgaccggagcgacgtccggactgacggcgggagcgacggcggtacccgagcgggac
ccgtacggcccgcgggccgcccgcaccgcggccggagtgctcgccgtgttcaacgaggcc
gacgtcctcgcccccggcgacgtgcacgtggcgcgccggctggccgggctcggcggacgc
ggtgacccggtcggcgccgccgatccggcggcggcggagcccgagccggtggtgctcgcc
gcggcgctggcggtgcgcgcgatccgcaacggctcggtctgtgtcgatctcgggtcggtc
gcgtcgaccaccgcgggcgagggcgagatcaccgtcgacgtgtccgggctgccgtggccc
gagccgggtacgtggcgggccgcctgcgcggccagcccgctggtcgccgacggtgacgcc
gccccggccggtcggccgctgcggctgctcggcgacctgctctacctggagcggtactgg
caggaggaggagctggtgcggcgcgagttcgtcgcccgctccggcccggtcgcgcaggtg
gacccacagcggctgcgcaccgcgctggaccggctgctcgacgatcccggcgcggaacgg
caacggctggccgccgcggtcgccgcgctgcgcccggtcagcgtgatcgcgggcggcccg
ggcaccggcaagacgacgaccgtcgcccgcctgctcggcgtcctgcacgacctgcactcc
gaccggccggggctccccccgttgcgggtcgcgctggccgcaccgaccgggaaggccgcc
gcccggctcacccagtcggtcgccgaggcggtcacccacatgcctcccgacgaccggtca
gccgtcgagggcacggtggcctccaccctgcaccggctgctcggctcgcggggcgcgtcc
ggccggttccggcaccatcgcggcaaccggctgccgcacgacgtggtggtcgtcgacgag
acctcgatggtgtcgctgacgatgatggcgcgattgctggaggcggtacgcccggacgcc
cggctggtgctggtcggcgacccggagcagctcgcctcggtggaggcgggtgccgtgctc
ggggatctcgccgaggcatccggccggaccgaaccggagctgcaggaggcgctggaggcg
tgcggcgcgttccgggccgaacgcccggtccgtcgcaccggcgatcttggtgcccccgat
cccggagccgaaacctccggtaccgggaccgaggcctcccgtgcgagtgcccgtgccgag
gccgatgcctccagcgccgaggccggtgccggtgactccggtgccgacgcctccggagcc
gacggctccggtgccgatgcctccggtgccgaggccacggcctccgctgtcgcgggtgag
ccggtcgtggtgcgcaacggcgtcgtccggttgcagcgcaactggcggttcagcggcgcg
atcgccgcgttcgcctcggccgtccagtccggcgacggcgacgccgcgatggcgctgctc
gccggggggacggccgagctgtcgttcgtcgcggtggatccggccgaggtcggggccgac
gggctgaccccgctgcgctcgcaggtcgtcggggcggccgtcgacctgatcggcgccgcc
gaggagggcaacgtcgagcaggcgctgcgggtgctcgacgatcaccggctgctgtgcggg
caccgccgcggcccgtacggcgtcgcgcgctggaccgcggagatcgagcggtggctgtcc
gccgcccgccccggctacgacgcgcaggccccgtggttccccgggcggccgctgctggtc
accgcgaacgactacgacctcggcctgttcaacggggacaccggcgtcgtcgtccggacc
gaggacgggcaccgggcggtgttcgtccgcgagggcaggcccgccgcgttcgaaccggcc
cgcctcggcggggtcggcaccgtctacgcgatgaccgtgcaccgcagccagggcagccag
ttccgccgggtcaccgtcgtcctgccgcccgccgactccccgctgatgacccgcgagctg
ctctacaccgcggtcacccgggccaaggagtcggtccggatcatcggcaccgaggccgcg
gtccgggctgcgatcgcccgtcccgccggccgggcgagcggtctgcgcctgcgcctcgcc
accccctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (14)   
   Pfam (14)   
All databases (22)   

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