KEGG   Prunus avium (sweet cherry): 110745510
Entry
110745510         CDS       T05161                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
Organism
pavi  Prunus avium (sweet cherry)
Pathway
pavi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pavi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110745510
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pavi03041]
    110745510
Enzymes [BR:pavi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     110745510
Spliceosome [BR:pavi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    110745510
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    110745510
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C HA2_N AAA_22 DEAD AAA_19 nSTAND3 AAA_30 ABC_tran T2SSE TsaE SRP54 AAA_23
Other DBs
NCBI-GeneID: 110745510
NCBI-ProteinID: XP_021801307
UniProt: A0A6P5REN6
Position
Unknown
AA seq 949 aa
MAKQFRKKVLSREDDEDETAQNRKEKERGVKRQPTSPHDEENDDGSESEQERLRDQRERE
QLDRNIRERDAAATRKLSEQKQAFATRRSNIVGDVETLRKVSRQEYLKKREANKLKELGE
SIEDEEYLYKDVKRTEAEYNRLSYEKKIYELATKHEAATHHDHDQYYRIPEPHDDHEGGV
NQEKRFSVGLQRCWDDDLNARDKKSNPFAEQKAWEDQQIGKATLKFGSKNKRRKCDDEYD
FVFEDQIEFVKASVLLEGDQMIANGNGDVGKVQPTHELDKLREERKTLPIYSFRERLLQD
VEKNQILIIVGETGSGKTTQIPQYLHEAGYTRGGKKIGCTQPRRIAAMSVAARVSQEMGV
KLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLCEPDLASYSVVMVDEAHERTLSTDV
LLGLLKDIARYRPDLKLIISSATLDAEKFSDFFDSAKILRIPGRRYPVDIHYMEAPQADY
LDAAIVAALQIHVTQPPGDILVFLTGQEEIETAEEIFKHRTRGLGTKISELIVCPIYANL
PTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKMKSYNPRSGMESLQV
TPISKASSMQRAGRAGRTGHGKCFRLYTSYNYDSDLDDTTVPEVQRTNLANVVLTLKSLG
IHDLVNFEFMDPPPCEALLKALELLFALGALNKVGELTKVGRRMAEFPVDPMLSKMIVAS
DKYKCSDEVISIAAMLSTGSSIFYRPKDKQVHADTARLRFHSGNVGDHIALLKVYNAWKE
ANYSTQWCYENYIQVRSMKRARDIRDQLERLLERVEIKLSSSNDLEAIKKAVTSGFFPHC
ARLQKNGCYRTIKHPHTAHIHPSSGTMALEHHVLPRCVLYHELVLTTKEYMRQVTEIKPE
WLVEIAPHYYQLNGVVEEDYSTSKKMPRGKGRTSTSKQIPNLVDYSICV
NT seq 2850 nt   +upstreamnt  +downstreamnt
atggcgaaacagttcaggaagaaggtgttgagtcgagaagatgatgaagatgagactgca
caaaacagaaaagagaaagagagaggggttaaacgacaaccaacttccccacatgatgaa
gaaaatgatgatggttcagagtctgaacaagagagattgcgtgatcaaagagaaagggag
caattggaccgtaatataagggagcgggacgcagcagcaacgcgaaagctatcagagcaa
aagcaggcttttgctactcggagaagcaatattgttggcgacgttgaaactttaagaaaa
gtttcaagacaagaatatttaaagaaaagggaggcaaataaattgaaggagcttggagaa
tctatagaagatgaggagtacttgtataaagacgttaagcgtactgaagcggaatacaat
cgattaagttacgagaagaaaatatatgagcttgcgacgaagcatgaggctgctactcat
catgatcatgatcagtactacaggattccggaaccccatgacgatcatgagggcggtgtt
aatcaggagaagcgattctcggtgggtttacaacgttgctgggatgatgatctgaatgcc
agggataaaaaatcaaacccttttgctgaacagaaagcttgggaggatcagcaaattggg
aaggcaacattgaagtttggttcgaaaaacaaaaggcggaaatgtgatgacgagtatgat
tttgtatttgaagaccagattgaatttgtcaaggcgtcggtactactggagggtgatcag
atgattgctaacggtaatggtgatgtcgggaaagtgcaaccaacccatgagttggataag
ctgcgggaggagaggaaaacattacctatctactcatttcgtgagaggttgctccaagat
gttgaaaaaaatcagattcttattattgttggcgaaactggatctggaaaaactacacag
atacctcaatatctacacgaggccgggtacactaggggaggaaagaagatcgggtgcaca
caaccacggcgaattgctgcaatgagtgttgctgccagggtttctcaagagatgggtgtc
aagcttgggcatgaggttggttattccatccgtttcgaggactgcacctcggagaagact
gttttgaaatacatgacagatggaatgctgctgcgagaattcctttgtgagccagatttg
gcaagctacagtgtggtgatggtggacgaggctcacgagagaacactgtcaacggatgtt
ttgttaggattgctcaaggacattgcacgatatagacctgatcttaaactgatcatttca
agtgctactcttgatgctgagaagttcagtgatttctttgattccgccaagattttaaga
atccctgggagacggtatccggttgatatacactacatggaagcaccgcaggctgattac
ctagatgcagcaattgtggctgcacttcagatacacgtgacacaaccgcctggggacata
ttggtttttctcactggtcaggaagaaattgaaaccgcggaggagatattcaaacatagg
acaagggggttagggacaaaaattagtgagcttatagtctgtcccatatatgcaaacctg
cccacggagctgcaggctaaaatctttgagcccacaccggaaggggccagaaaagttgtc
cttgctacaaatattgcagagacctctctaactattgatgggatcaaatatgtcattgac
cccggcttcagcaagatgaaatcttataatccgaggagtgggatggagtcactgcaagtc
accccgatctcaaaggcatcctccatgcaaagggcaggtcgggcgggtcgaacaggccac
gggaagtgcttccggttatatacaagttacaactatgacagtgatttagatgataccaca
gttccggaagtgcagcggactaacctcgccaatgtggttctcacgctcaagagcctcggc
attcatgacttggtgaatttcgagttcatggaccctccaccttgtgaagcattactaaaa
gccctggaattgttgtttgcactcggtgcattaaacaaagtgggggagctaactaaagtt
ggcagacggatggcagagttccctgttgatccaatgctatctaaaatgatcgttgcctcg
gacaagtacaagtgctcagatgaggtaatctccattgctgccatgctttccaccggcagt
tcaatcttctatcgcccaaaagacaaacaagtacatgctgacactgcaaggttgaggttt
cacagtgggaatgtgggagatcacattgcattgcttaaggtttacaatgcatggaaagag
gcaaattactcgacgcaatggtgttacgaaaactacatacaagttaggagcatgaaaaga
gcaagagacatccgtgatcaactcgagcgcctcttggagagggttgagatcaagctcagt
agctcaaatgatttagaggctataaagaaggccgttacatcaggattcttccctcattgt
gctaggctgcagaagaacgggtgttatagaacaatcaaacatccgcacactgcccatata
caccccagctcagggactatggcattggaacatcacgtgcttcctagatgtgttttgtac
catgaactggtacttactaccaaggaatatatgagacaggtcacagagataaagccggaa
tggttggttgaaatagctccacattattaccagttgaacggcgtcgttgaggaggattac
tcaacttcgaagaagatgcctcgtggaaaagggcgtacaagcacttcaaagcaaattcct
aatcttgttgattacagcatatgtgtataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (14)   
   Pfam (14)   
All databases (26)   

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