KEGG   Physeter catodon (sperm whale): 102975873
Entry
102975873         CDS       T06011                                 
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
pcad  Physeter catodon (sperm whale)
Pathway
pcad03013  Nucleocytoplasmic transport
pcad03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pcad00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    102975873 (UPF1)
   03015 mRNA surveillance pathway
    102975873 (UPF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcad03019]
    102975873 (UPF1)
Enzymes [BR:pcad01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     102975873 (UPF1)
    5.6.2.5  RNA 5'-3' helicase
     102975873 (UPF1)
Messenger RNA biogenesis [BR:pcad03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     102975873 (UPF1)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     102975873 (UPF1)
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase ATPase nSTAND3 Helicase_RecD DEAD AAA_16 UvrD-helicase SRP54 UvrD_C_2 AAA_22
Other DBs
NCBI-GeneID: 102975873
NCBI-ProteinID: XP_007117002
Ensembl: ENSPCTG00005019734
UniProt: A0A2Y9F7V0
Position
Unknown
AA seq 1127 aa
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGAPV
CAGPGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWL
RDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQV
DFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDL
NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT
EKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD
EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV
LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAF
PSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAA
NVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQG
REKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNY
YKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSS
QGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTP
KGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPG
LSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq 3384 nt   +upstreamnt  +downstreamnt
atgagcgtggaggcgtacgggcccagctcgcagactctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagtttaccgacttcactctt
cccagccagacgcagacgccccccggcggccccggaggtggcggcgctggggccccggtc
tgcgcgggcccgggcgcggcggccggacagctcgacgcgcaggtcggtggacctgagggc
atcctgcagaacggggccgtggatgacagcgtggccaagactagccagttgttggccgag
ttgaacttcgaagaagatgaggaagatacctattacacaaaggatctccccatacatgcc
tgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaataccagcaagaag
tggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcacctcgtgagg
gcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagacggttctggag
tgttataactgcggctgccgcaacgtcttcctcctcggcttcatccctgccaaggctgac
tcggttgtggtgctgctatgcaggcaaccctgtgccagtcagagcagcctcaaggacatt
aactgggacagctcacagtggcagcccctgatccaggaccgttgcttcctctcctggctg
gtcaagatcccttctgagcaggagcagctgcgggcgcggcagattaccgcccagcagatc
aacaagctggaggagctctggaaggaaaatccttctgccaccttggaggaccttgagaag
ccgggagtggatgaggagccgcagcatgtcctcctgcggtatgaggatgcctaccagtac
cagaacatattcggtcctctggtcaagctggaggctgactacgataagaaactgaaagag
tcacagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatttggtta
agagacatgcggctcatgcaaggggatgagatatgcctgcggtacaaaggggacctggcg
cccctatggaaagggatcggccatgtcatcaaggtccctgataattatggcgatgagatc
gctattgagcttcggagcagtgtgggtgcacctgtggaggtgactcataacttccaggtg
gacttcgtgtggaagtcaacctcattcgacaggatgcagagtgcgttgaaaacctttgct
gtggacgagacctccgtgtcgggctacatctaccacaaactgctcggccacgaggtggag
gatgtgatcatcaagtgccagctgcccaagcgcttcacggcgcaggggctccctgacctc
aaccattctcaggtttacgccgtgaagactgtgctgcagagaccactgagtctgatccag
ggcccaccgggcacaggaaagacggtgacctcagccactattgtctaccacctggctcgg
caaggcaatgggcccgtgcttgtctgtgcgccaagcaacatagccgtggatcagctgact
gagaagatccaccaaactgggctgaaagtcgtgcggctctgtgccaagagccgagaggcc
atcgactccccggtgtcgttcttggccctgcacaaccagatcaggaacatggacagcatg
ccagagctccagaagctgcagcagctgaaggatgaaaccggcgagctgtcgtctgcggac
gaaaagcggtaccgggccctgaagcgcactgccgagagggagctgctcatgaatgcagat
gtcatctgctgcacgtgtgtgggcgccggggacccgaggctcgccaagatgcagttccga
tccattttaatcgacgagagcactcaggccaccgagccagagtgcatggtccctgtggtc
cttggagccaagcagctgatcctcgtgggcgaccactgccagctgggccccgtggtgatg
tgcaagaaggcggccaaggctggcctgtcccagtcgctctttgagcgcctggtggtgctg
ggcatccgtcccatccgcctccaggtccagtatcggatgcatcctgcgctcagtgccttc
ccatccaacatcttctatgagggctctcttcagaatggtgtcactgcagcggatcgtgtg
aagaaggggtttgacttccagtggccccaaccggataaaccaatgttcttctacgtgacc
cagggccaagaggagattgccagctcaggcacctcctacctaaacaggacggaggctgca
aatgtggagaagatcaccacgaagctgttgaaggcgggcgccaagccagaccagatcggc
atcatcacgccctatgagggccagcgctcctacctggtgcagtacatgcagttcagtggc
tccttgcacaccaagctctaccaggaggtggagatcgccagcgtggatgcgttccagggc
cgcgagaaggacttcatcatcctctcctgtgtgcgggcgaatgagcaccaaggcattgga
tttttaaacgaccccaggaggcttaatgtggccttgaccagagcacgatatggggtcatt
attgtgggcaacccaaaggccctgtccaagcagccgctctggaaccacctgctgaactac
tacaaggagcagaaggtgctggtggaggggccgctgaacaacctgcgggagagcctcatg
cagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgcttcatgaca
acagccatgtatgatgcccgggaggccatcatcccaggatcggtctatgaccggagcagc
cagggccggccctcaaacatgtacttccagacccatgaccagattggcatgatcagtgct
ggccccagccacgtggctgccatgaacattcccatccccttcaacctggtcatgccgccc
atgccgccaccggggtattttggacaagctaacgggccagccgcaggccggggcacccca
aaaggcaagaccggtcgtgggggacgccagaagaaccgctttgggcttcctgggcccagc
cagacgaacctccccaatagccaggccagccaggatgtggcgtcacagcccttctcacag
ggcgctctgacccagggctacatctccatgagccagccctcccagatgagccagcccggc
ctctcccagcctgagctgtcccaggacagttaccttggagatgaatttaagtcacagatt
gatgtggcgctgtcgcaagactccacgtaccagggggagcgggcgtaccagcacggcgga
gtgacggggctgtcccagtattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (17)   
   Pfam (17)   
All databases (36)   

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