KEGG   Phoenix dactylifera (date palm): 103720779
Entry
103720779         CDS       T03274                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
pda  Phoenix dactylifera (date palm)
Pathway
pda03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pda00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103720779
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pda03041]
    103720779
Enzymes [BR:pda01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103720779
Spliceosome [BR:pda03041]
 Complex C
  Other components
   Step II factors
    103720779
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N S1 DEAD AAA_22 AAA_19 Cas3-like_C_2 nSTAND3 AAA_16 AAA_30 TsaE Sigma54_activ_2 ABC_tran Flavi_DEAD PhoH T2SSE GIPC1_GH2 ATPase
Other DBs
NCBI-GeneID: 103720779
NCBI-ProteinID: XP_008808919
UniProt: A0A8B7CXY4
Position
9:complement(16495883..16502081)
AA seq 1184 aa
MAPAADDGLKKLEYLSLVSKICTELESHVGCGDKVLAEFITDLGRSSETVEEFDAKLKEN
GAEMPDYFVRTLLTIIHAIVPPKPKSAKPSSDQNQAKKRSSAFPALSCRDDPERAKELRR
EMERDAEMKAASEVRSRDDHRDRDRGQDRDRDRDRDRRRDRDRDREYRRERDRDGDRDRD
WDRHNRDRSHRRDRDRDRYDNSRAYDEEEEDGRDGRNPNLSSRRYADEPELYKVYKGRVS
RVMDTGCFVQLNDFRGKEGLVHVSQIANKRVANAKDAVKRDQEAFVKVISVSGQKLSLSM
RDVDQKTGKDLLPMRKNSEDEALRANPSSGNHGPVTRTGLSGITIVEEDENGPSRRPLKR
MSSPEKWEAKQLIASGVLDVREHPMFDDDADGLLYEEEGAEEELEIELNEDEPAFLQGQS
RFSIDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPM
PDTGERHLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRSKLSIQEQRQSLPIYKLKKEL
IQAVHENQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEF
GCRLGEEVGYAIRFEDCTSPETVIKYMTDGMLLREILVDENLSQYSVVMLDEAHERTIHT
DVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPET
DYLDAALITVLQIHLTEPEGDILVFLTGQEEIDHACQCLYERMKGLGKNVPELIILPVYS
ALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGIDSL
IITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTVPEIQRINLGMTTLNMKA
MGINDLLSFDFMDPPSPQALISSMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLL
ASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKA
KNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDRYKLDVVSAGKNFTKIRKAITAGFFFH
SARKDPQEGYRTIVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLV
ELAPRFFKSADPTKLSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq 3555 nt   +upstreamnt  +downstreamnt
atggcgccggcggctgacgacggcctgaagaaactcgagtacctctctctcgtctccaaa
atctgcacggagctcgagtcccacgtcgggtgcggcgacaaggtcctcgccgagttcatc
accgatctcggccgcagttccgagacggtggaggagttcgacgccaagctcaaggagaac
ggcgccgagatgcccgactacttcgtccgcaccctcctcaccatcatccacgccatcgta
cccccaaagcccaagtccgccaagccctcctccgaccagaatcaagccaagaagaggtcc
tccgccttccccgccctctcctgccgcgacgaccccgaacgcgccaaggagctccgccgc
gagatggagcgtgacgccgagatgaaggccgcatctgaggtccgcagccgcgacgatcac
cgcgatcgtgatcgcggccaagatcgggatcgggaccgagaccgagaccggcgacgtgat
cgagatcgagatcgagagtataggcgagagagggatagagatggagatagagacagagac
tgggacagacataatagagataggagtcacagaagggatagagatagagataggtatgat
aattctagggcatatgacgaggaggaagaagatggcagggatgggagaaaccctaacctt
agtagtcggaggtatgcggacgagccggagctctataaggtgtataagggtagggtttcg
cgagtgatggatacggggtgctttgtccagttgaatgatttcagggggaaggagggtctg
gtccatgtttcccagattgcaaataaaagggtcgccaatgcaaaggatgcagtgaagcgc
gatcaagaagcattcgtgaaggtgatctcagtgtctgggcagaaacttagcctttccatg
agggatgtggaccagaaaaccggaaaagatctgcttccaatgaggaagaactcggaggat
gaggcattgagggcgaacccttcaagtggcaaccatgggccggtgacaaggactggcctt
tcgggcatcacgattgtggaggaggatgagaatggaccgtctcggcggccgttgaagagg
atgagctcaccagagaagtgggaggcgaagcagctgattgcttctggggttttggatgtc
agggagcatccaatgttcgatgacgatgccgatgggctgctgtatgaggaagagggagct
gaagaagagctggaaattgagcttaatgaggatgagcctgcattcttgcaagggcagagc
cggttctcaattgacatgtcccctgtcaagattttcaagaatcctgaaggttctttgagc
agggcggcagcactccagtcagctctcattaaggagaggagggaggtccgagagcagcag
cagaggacaatgcttgattccatcccgaaggatcttaaccgcccatgggaagaccctatg
ccagatacaggtgagaggcaccttgctcaggagctgaggggtgttggattgtcggcctat
gacatgcctgaatggaagaaagatgcatatggaaaggctttaactttcgggcagaggtca
aagctttcaatacaggagcaaaggcagagtcttccgatctataaactgaagaaagagctg
attcaagctgtgcatgaaaaccaggttctggtcgtcattggtgagaccggttcagggaag
acaacacaagtcactcaatatctggcggaggcaggttacacgacaaggggaaaaattggg
tgcacacagcctcgtagggtggcagcaatgtcggttgctaagagggtggcagaagaattc
gggtgccgtttgggagaagaagttggttatgctattaggtttgaggactgcactagtcca
gagacagtgatcaagtatatgacagatggtatgcttcttagggagatcttggtcgatgaa
aacctttcacagtactctgttgtcatgcttgatgaagctcatgagagaacaatccacact
gacgttctttttggtttgctaaaacagctagtgaagcgcaggcctgaccttcggttgata
gtcacttctgccacacttgatgcagaaaagttctctggttatttctttaactgcaatatt
ttcaccattccagggagaacatttccagtggagatactctacacgaagcagccagagact
gattacttagatgcagctctaatcactgttttgcagatccacttgacggaacccgagggt
gatattcttgtcttcttgactggccaagaggaaattgatcatgcttgtcagtgtctttat
gagagaatgaaaggtttaggaaagaatgttccagagttgattatcttgccagtatacagt
gctcttcctagtgaaatgcaatccaggatttttgaacctgcacctcctggaaagaggaaa
gtggttgtggctactaatattgccgaggcttctttgacaattgatgggatatattatgtt
gttgatcctggttttgcaaagcaaaatgtgtacaacccaaaacaaggcattgattcactg
atcatcactcccatctcgcaagcatcagccaagcagcgagctgggcgtgctgggcgtact
ggcccagggaagtgttaccgtctctacacagagagtgcctaccgcaatgaaatgtcaccc
accacagttcctgaaatccaaagaattaacctcgggatgacaacactaaatatgaaggcc
atggggattaatgacctcttgtcatttgattttatggacccgccatcacctcaagcactc
atatcttccatggaacaactatacagtcttggagcattggatgaagaggggcttctgacc
aaattgggtagaaaaatggctgaatttccactggaaccaccattatcaaaaatgcttctg
gccagtgtcgacctaggatgcagcgatgagattttgaccattatagcaatgattcagact
gggaatatcttctacaggccaagggagaagcaagcccaagcagatcagaaaagagccaag
ttctttcagccagaaggtgaccacttaacattacttgctgtatatgaggcttggaaggcc
aaaaatttttctgggccatggtgctttgagaacttcgtgcagtcacgttcccttcggagg
gcacaggatgtcagaaagcagcttcttactatcatggacaggtataaactggatgtcgtc
agtgccggtaaaaactttacaaagatacggaaggcaattactgcaggattcttcttccat
tctgctaggaaggacccccaggagggatatagaaccatagttgagaaccagccggtgtac
atccatccaagcagcgctttatttcagaggcagccagattgggtcatatatcatgagctg
gttatgacgacaaaagaatacatgagggaggtcacggtcatcgatcccaaatggttagta
gaattggcaccaagattttttaagtctgcagatcctacaaagttgagcaaaaggaagagg
caagagcgtatcgaaccactttatgacagataccatgaaccgaactcatggcgtttgagc
aaacgccgtgcttaa

  All links  
Gene (47)   
   RefGene (44)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (20)   
   Pfam (20)   
All databases (72)   

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