KEGG   Phalaenopsis equestris: 110030311
Entry
110030311         CDS       T05601                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
peq  Phalaenopsis equestris
Pathway
peq03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:peq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110030311
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:peq03041]
    110030311
Enzymes [BR:peq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     110030311
Spliceosome [BR:peq03041]
 Complex C
  Other components
   Step II factors
    110030311
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_N AAA_22 HA2_C DEAD AAA_19 ABC_tran nSTAND3 AAA_30 AAA_16 ATPase_2 AAA_14 AAA_29 FtsK_SpoIIIE NB-ARC AAA_23 AAA_24 DAP3 nSTAND1 SLFN-g3_helicase Sigma54_activat Flavi_DEAD
Other DBs
NCBI-GeneID: 110030311
NCBI-ProteinID: XP_020588624
Position
Unknown
AA seq 699 aa
MAVLPILRFEDKIVETVEKNPVVVIIGETGSGKSTQLSQILHRRGYTRSGAIAITQPRRV
AAVSLSRRVALEVGVQLGEEVGYAIRFEDRTSAKTCIKYLTDGVLLRESLSNPELNQYSV
IILDEVHERSLNSDIILGLMKRLVKIRSSNLRVLITSATLDGVKVSKFFSGCPVMNIPGK
LFPVEKLYSSERPKCYIESSLRTALDIHSREPPGDILIFMTGKDDIDKMVSKLEEKIQNL
DEGSCMDAQVLSLHGSLPPEMQVRVFSPAHPNCRRIIVATNIAETSLTVDGVVYVIDTGY
VKQRQYNPSTGMYSLDVVQISRVQADQRAGRAGRTRPGKCYRLYPSKVYHEEFLDATVPE
IQRSSLAGSVLYLKSLNLPDIDILNFDFLDPPSRESLADALRQLYLIDAIDEDGMITHVG
RTMAELPLEPSLSRTLIEANELGCLSQALTVVAMLSAEITHLSIHSIKDKKRKQPLKLPS
GSYWGDHIHLLRIYENWDCADYDPAWCTEHNLQVRNMKFSRDVRKQLSQIMQKISKGPVD
IQSSVRQKKGEQEYRSLRKALCRGFGNQLAERMLHHNGFRTLGYRSQLVQVHPSSMLETN
EDGRLPDYVVYHELISTSRPFMRNVCAVDISWVAPILKKLEKMDIHKLSGGLESEKIEQA
EHKQLQLHNLEESGSGRGDSMESRIQAARERYLARKANK
NT seq 2100 nt   +upstreamnt  +downstreamnt
atggcggttctaccgattcttcggtttgaagataagatcgtggagaccgtggagaagaat
cccgttgtcgtgattataggagaaactggctccggaaagagcactcagctgtctcagatt
ctacacaggagaggatacactcgatctggagccatcgcaatcacccagcctcgcagagtt
gctgctgtatctctttcgaggagggtggcattagaagttggcgtgcagctcggtgaagaa
gtgggctatgccattcggtttgaagatcggacatcagctaaaacttgcatcaagtatctc
actgatggtgttcttctccgtgaaagcctctctaatccagaattgaatcaatattcagtt
ataattcttgatgaagttcacgagagaagcttaaactctgacataatacttgggttgatg
aaacgtttggtcaagattcgttcttcaaatttaagagttcttattacttcagcaactttg
gatggagtgaaggtatcaaaattcttttcaggctgtccggtaatgaatattcccggaaag
ttatttcctgtggaaaagttgtacagctccgaacgccctaaatgctatattgaatcatcc
ttaagaactgctcttgacatacactctcgtgaaccgccaggagacatccttatatttatg
acaggaaaggatgacatagacaaaatggtgtccaagctggaggaaaagattcaaaacctt
gacgaaggttcatgtatggacgcccaagtcctttcacttcatggttctttacctcctgag
atgcaggttcgtgtgttcagtccagcgcatccaaattgtaggcggattattgtcgccaca
aatatagctgaaacttctttgactgtagatggtgttgtgtatgtcattgatacgggttat
gtgaagcaacgtcaatataatccatcgactgggatgtattctcttgatgtggttcagatt
agcagagtccaagctgatcagcgtgctggccgagctggaagaactcgtccggggaagtgt
tatagattgtacccctccaaagtctatcatgaagagttccttgatgctacggttcctgaa
atccagaggtcatctttggcaggaagtgttttatacctgaaatcacttaatcttcccgac
atcgatatcttgaactttgattttcttgatcctccttcacgtgagtccttagcagatgct
ttaaggcagttatatctcattgatgctattgacgaagatggaatgataacccatgtggga
cggaccatggcagaattgccgcttgagccttcactgtcaaggactttaattgaggcaaat
gaattagggtgcttgtctcaagcattaaccgttgtagctatgctatcagctgaaatcaca
catctgtctattcatagcattaaggacaagaagaggaaacaacctttaaaacttccatct
ggctcgtactggggtgatcacatccatttgcttcgaatatatgaaaattgggattgtgct
gattatgatccagcttggtgcactgaacataacttgcaggttcgtaacatgaagttcagt
agagatgttagaaagcaattatctcagataatgcagaagatatctaaaggtcctgtggat
atacaatccagtgtaaggcagaaaaaaggtgaacaagagtaccgaagtttgagaaaagcc
ttgtgcaggggctttggaaaccagcttgcagaaagaatgcttcaccacaatggcttccga
acacttggttataggtcacaacttgttcaggttcacccatcttcaatgctggaaactaat
gaagatggcaggttgccagactacgttgtgtaccatgaacttatcagtacctcccgcccc
tttatgaggaatgtttgtgcagtagatatatcatgggttgcgcctattttaaagaagctg
gagaagatggacatccacaagctgagtggtggattggagagtgaaaaaatcgaacaagca
gagcacaaacagctccagctacacaatttagaggaaagcggcagcggcaggggtgactcc
atggagagtagaattcaggcagctcgtgagcgctatcttgctcgtaaagcaaataaataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (23)   
   Pfam (23)   
All databases (40)   

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