GenomeNet

Database: Pfam
Entry: End_N_terminal
LinkDB: End_N_terminal
Original site: End_N_terminal 
#=GF ID   End_N_terminal
#=GF AC   PF12218.9
#=GF DE   N terminal extension of bacteriophage endosialidase
#=GF AU   Mistry J;0000-0003-2479-5322
#=GF AU   Gavin OL;
#=GF SE   pdb_1v0e
#=GF GA   26.30 26.30;
#=GF TC   26.30 26.30;
#=GF NC   26.20 26.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   15608653
#=GF RT   Crystal structure of the polysialic acid-degrading endosialidase
#=GF RT   of bacteriophage K1F.
#=GF RA   Stummeyer K, Dickmanns A, Muhlenhoff M, Gerardy-Schahn R, Ficner
#=GF RA   R;
#=GF RL   Nat Struct Mol Biol. 2005;12:90-96.
#=GF DR   INTERPRO; IPR024429;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This domain family is found in bacteria and viruses, and is
#=GF CC   approximately 70 amino acids in length. This domain is found in
#=GF CC   the bacteriophage protein endosialidase. The two N-terminal
#=GF CC   domains (this domain and the beta propeller) assemble in the
#=GF CC   compact 'cap' whereas the C-terminal domain forms an extended
#=GF CC   tail-like structure. The very N-terminal part of the 'cap'
#=GF CC   region (residues 246 to 312) holds the only alpha-helix of the
#=GF CC   protein and is presumably the residual part of the deleted
#=GF CC   N-terminal head-binding domain. The endosialidase protein
#=GF CC   complexes to form homotrimeric molecules.
#=GF SQ   17
#=GS K7QLS1_9CAUD/76-142       AC K7QLS1.1
#=GS Q2WC58_BPK1E/39-102       AC Q2WC58.1
#=GS A0A1B1W279_9CAUD/158-224  AC A0A1B1W279.1
#=GS A0A1Q1PUL8_9CAUD/167-233  AC A0A1Q1PUL8.1
#=GS A0A0A0RVE3_9CAUD/129-179  AC A0A0A0RVE3.1
#=GS A0A1Q1PV10_9CAUD/167-233  AC A0A1Q1PV10.1
#=GS A0A385ISS1_9CAUD/176-242  AC A0A385ISS1.1
#=GS A0A1S6KVE9_9CAUD/246-312  AC A0A1S6KVE9.1
#=GS D2XJ95_9CAUD/167-233      AC D2XJ95.1
#=GS A5VW57_9CAUD/146-212      AC A5VW57.1
#=GS A0A1S1TL96_9RHIZ/131-182  AC A0A1S1TL96.1
#=GS A0A157STN0_9BORD/194-249  AC A0A157STN0.1
#=GS A0A1Q1PV35_9CAUD/167-233  AC A0A1Q1PV35.1
#=GS FIBER_BPK1F/246-312       AC Q04830.4
#=GS FIBER_BPK1F/246-312       DR PDB; 1V0E B; 246-312;
#=GS FIBER_BPK1F/246-312       DR PDB; 3JU4 A; 246-312;
#=GS FIBER_BPK1F/246-312       DR PDB; 1V0F E; 246-312;
#=GS FIBER_BPK1F/246-312       DR PDB; 1V0F B; 246-312;
#=GS FIBER_BPK1F/246-312       DR PDB; 1V0E C; 246-312;
#=GS FIBER_BPK1F/246-312       DR PDB; 3GVK B; 246-312;
#=GS FIBER_BPK1F/246-312       DR PDB; 1V0E E; 246-312;
#=GS FIBER_BPK1F/246-312       DR PDB; 3GVK C; 246-312;
#=GS FIBER_BPK1F/246-312       DR PDB; 3GVK A; 267-312;
#=GS FIBER_BPK1F/246-312       DR PDB; 1V0F F; 246-312;
#=GS FIBER_BPK1F/246-312       DR PDB; 3GVL A; 246-312;
#=GS FIBER_BPK1F/246-312       DR PDB; 1V0E F; 246-312;
#=GS FIBER_BPK1F/246-312       DR PDB; 1V0F A; 246-312;
#=GS FIBER_BPK1F/246-312       DR PDB; 3GVJ A; 246-312;
#=GS FIBER_BPK1F/246-312       DR PDB; 1V0F C; 246-312;
#=GS FIBER_BPK1F/246-312       DR PDB; 1V0E D; 246-312;
#=GS FIBER_BPK1F/246-312       DR PDB; 1V0F D; 246-312;
#=GS FIBER_BPK1F/246-312       DR PDB; 1V0E A; 246-312;
#=GS A0A0A0RUQ7_9CAUD/376-426  AC A0A0A0RUQ7.1
#=GS A0A1T4XS31_9BACT/29-73    AC A0A1T4XS31.1
#=GS I7HXG2_9CAUD/76-142       AC I7HXG2.1
#=GS I7HXG2_9CAUD/76-142       DR PDB; 4HIZ C; 102-142;
#=GS I7HXG2_9CAUD/76-142       DR PDB; 4HIZ B; 105-142;
#=GS I7HXG2_9CAUD/76-142       DR PDB; 4HIZ A; 99-142;
K7QLS1_9CAUD/76-142                  AVGDGATDDTNAITQLLAAMPD.GWI.VDG.RNLTFKVTTLP.DISKFKNAAFVYERIVGQPLTYVSEGFF..............
Q2WC58_BPK1E/39-102                  AKGDGKTNDQDAVNAAMAS---.GKR.IDG.AGATYKVSSLP.DMERFYNTRFVWERLAGQPLYYVSKGFI..............
A0A1B1W279_9CAUD/158-224             AKGDGVTDDTSALNGVLNAAPV.GQK.ING.NGKTYKVTSLP.DISRFINTRFVYERIPGQPLYYVSEEFV..............
A0A1Q1PUL8_9CAUD/167-233             AVGDGVTDDTQSIFNVLAASPN.NWI.IDG.RGLTYKVSQLP.DISKFKNAAFVYERVAGQPLTYVADGFF..............
A0A0A0RVE3_9CAUD/129-179             AKGDGITDDSSAFA-LVESKYT.NKI.IDL.QGFTYKVNALP.FKNKYTNGKF------------------nvg...........
A0A1Q1PV10_9CAUD/167-233             AVGDGVTDDTQSIFNVLAASPN.NWI.IDG.RGLTYKVSQLP.DISKFKNAAFVYERVAGQPLTYVADGFF..............
A0A385ISS1_9CAUD/176-242             AKGDGLVDDTVALNNLLSAAPV.GQK.ING.NGRTYKVSALP.DISRFVNTRFVYERIPGQPLYYVSDEFV..............
A0A1S6KVE9_9CAUD/246-312             AKGDGVTDDTAALTSALNDTPV.GQK.ING.NGKTYKVTSLP.DISRFINTRFVYERIPGQPLYYASEEFV..............
D2XJ95_9CAUD/167-233                 AVGDGVTDDTQSIFNVLAASPN.NWI.IDG.RGLTYKVSQLP.DISKFKNAAFVYERVAGQPLTYVADGFF..............
A5VW57_9CAUD/146-212                 AIGDGVHDDTSALSELLSVATG.GEK.IDG.RGLTFKVSTLP.DVSRFKNARFLFERIPGQPLFYVSEDFI..............
A0A1S1TL96_9RHIZ/131-182             AVGDGATDDSAAVTAALAS---.GYY.LEG.LGRTYNVSAAPtDFTKIRRAAF------------------kvgav.........
A0A157STN0_9BORD/194-249             AAGDGVSDDTV-FFAALEAGTS.GQP.INL.LGRTFAVSALP.NGNDYFNGAFV---VAGQ----------ymp...........
A0A1Q1PV35_9CAUD/167-233             AVGDGVTDDTQSIFNVLAASLN.NWI.IDG.RGLTYKVSQLP.DISKFKNAAFVYERVAGQPLTYVADGFF..............
FIBER_BPK1F/246-312                  AKGDGVTDDTAALTSALNDTPV.GQK.ING.NGKTYKVTSLP.DISRFINTRFVYERIPGQPLYYASEEFV..............
#=GR FIBER_BPK1F/246-312       SS    ---EEEEE-HHHHHHHHHHS-T.TS-.EE-.TT-EEEESS--.-GGGEES-EEEE-SSTT--EEEE-BTSS..............
A0A0A0RUQ7_9CAUD/376-426             AKGDGATNDTS-VFTTLENSFT.DKI.IEL.NGKTYLVDSLP.TKNKYVNGRFL-----------------vg............
A0A1T4XS31_9BACT/29-73               AVGDGVTDDRAAIEKALKD-AA.GTP.LDG.EGLTYAVQ---.----------------------------gtvsvsvdvd....
I7HXG2_9CAUD/76-142                  AVGDGATDDTNAITQLLAAMPD.GWI.IDG.RNLTFKVTTLP.DISKFKNAAFVYERIVGQPLTYVSEGFF..............
#=GR I7HXG2_9CAUD/76-142       SS    XXXXXXXXXXXXXXXXXXXXXX.X--.EEE.CCEEEE-SS--.-GGGEBSEEEEEESSTTEEEEEE-BTSS..............
#=GC SS_cons                         XXXEEEEEXHHHHHHHHHHSXT.TS-.EEE.CCEEEEESS--.-GGGEESEEEEEESSTTEEEEEE-BTSS..............
#=GC seq_cons                        AhGDGlTDDTsAltssLsusss.Ghh.I-G.pGhTYKVosLP.DlS+FhNutFVaERlsGQPLhYsu-tFh..............
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