KEGG T02114: PflA506

Pseudomonas fluorescens A506: PflA506_3521

Entry

PflA506_3521      CDS       T02114

Symbol

uvrB

Name

(GenBank) excinuclease ABC subunit B

K03702

excinuclease ABC subunit B

Organism

pfc Pseudomonas fluorescens A506

Pathway

pfc03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:pfc00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    PflA506_3521 (uvrB)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfc03400]
    PflA506_3521 (uvrB)
DNA repair and recombination proteins [BR:pfc03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PflA506_3521 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      PflA506_3521 (uvrB)

SSDB

Motif

Pfam:

UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_22 HAMP AAA_30 Cauli_AT

Other DBs

NCBI-ProteinID:

AFJ54713

Position

complement(3922600..3924615)

AA seq 671 aa
MSDFQLVTRFEPAGDQPEAIRQMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQTNRPTL
VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ
MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLASLQY
TRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLMGAIEGIKVELAERLEYLRSNNKLVEAQRLEQRTRFDLEMILELG
YCNGIENYSRYLSGRDSGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETL
VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHAGRVIEQLVRPTGLVDPE
IEIRPALTQVDDLLSEINKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDT
VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA
ARNLNGRAILYADRITGSMERAIGETQRRRDKQIAFNLEHGITPKGVFKDVADIMEGATV
PGSRSKKRKGMAKAAEESAKYENELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQTRDE
IGKLRERLLAV

NT seq 2016 nt +upstreamnt +downstreamnt
atgtcggatttccagctcgttacccgttttgaacccgccggcgatcaaccggaagccatt
cgtcagatggtcgaaggcatcgaggccggcctggcgcaccagacgctgcttggggtgacc
gggtccggcaagaccttcagcatcgccaacgtgatcgcccagaccaaccgcccgaccctg
gtgctggcgccgaacaaaaccctggcggcgcagctctatggcgagttcaaggcgttcttc
ccgaacaacgcggtggagtatttcgtttcctactacgactactaccagcccgaagcctat
gtgccgtcgtccgatacctttatcgagaaggatgcgtcgatcaacgaccacatcgagcag
atgcgcctgtcggccaccaaggcactgctggagcgcaaagacgcgatcatcgtcaccacg
gtgtcgtgcatctacggcttgggcagcccggaaacctatctgaagatggtgctgcacgtc
gaccgtggtgacaaactcgaccagcgcgaattgctgcggcgcctggcgagcctgcagtac
acccgtaacgacatggattttgcccgcgccaccttccgggtgcgcggcgatgtgatcgac
atctacccggcggaatccgacctggaagcgattcgcatcgagctgttcgatgatgaggtc
gaaagcctgtcagccttcgacccgttgaccggtgaagtgatccgcaagctgccacgcttc
accttctaccccaaaagccattacgtgaccccacgcgaaaccttgatgggcgccatcgag
ggcatcaaggtcgagctggccgagcgcctggaatacttgcgctccaacaataagctggtg
gaagcccagcgcctggagcagcgcactcgcttcgacctggagatgatcctggaactgggt
tactgcaacggcatcgaaaactactcgcgttacctgtcgggccgtgactccggggcgccg
ccaccgacgctctatgactacctgccgccggacgccttgctggtgatcgacgaatcccac
gtcagcgtgccgcaggtgggcgccatgtataagggcgaccgttcgcgcaaggaaaccctg
gtggaatacggtttccgcctgccgtcggcgctggacaaccggccgatgcgctttgacgag
tgggaagccatcagcccgcagaccatcttcgtctccgctacgcccggcaactatgaagcc
gagcacgcgggccgcgtcatcgagcaactggtacgtcccactggcctggtggacccggaa
atcgaaatccgccccgcgctgacccaggtcgacgacttgctctcggaaatcaacaagcgc
gtggccctggaagagcgggtgctggtcaccactctgaccaagcgcatgtccgaagacttg
actgattacctggccgaccacggcgtgcgcgtgcgttacctgcactcggacatcgacact
gtggaacgcgtggaaatcatccgcgacctgcgcctgggcacctttgatgtgctggtgggg
atcaacctgctgcgcgaaggcctggacatgccggaagtgtcgctggtggcgatcctggat
gcggacaaggagggcttcctgcgctccgaacgctcgctgatccagaccatcggccgagcg
gcgcgtaacctcaatgggcgggcgatcctgtatgcggaccgcatcaccggttccatggag
cgtgcgattggcgagacccagcgtcgtcgcgacaagcagatcgcgttcaacctggaacat
ggcatcacccccaagggcgtgttcaaggacgttgccgacatcatggaaggcgccaccgtg
ccaggctcgcgcagcaagaagcgcaagggcatggccaaggctgccgaggaaagtgccaag
tacgagaacgaactgcgctcgccgagtgagatcaccaagcggattcggcagttggaagaa
aaaatgtaccagctggcgcgggatctggagtttgaagcggcggcgcagacgcgtgatgag
attggcaagttgcgtgagcgtctgttggctgtttga

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (17)   

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