KEGG   Paenibacillus graminis: PGRAT_18365
Entry
PGRAT_18365       CDS       T03325                                 
Name
(GenBank) polynucleotide phosphorylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
pgm  Paenibacillus graminis
Pathway
pgm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pgm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PGRAT_18365
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pgm03019]
    PGRAT_18365
   03016 Transfer RNA biogenesis [BR:pgm03016]
    PGRAT_18365
Enzymes [BR:pgm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     PGRAT_18365
Messenger RNA biogenesis [BR:pgm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     PGRAT_18365
Transfer RNA biogenesis [BR:pgm03016]
 Prokaryotic type
  tRNA degradation factors
   PGRAT_18365
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 SPATA25
Other DBs
NCBI-ProteinID: AIQ69376
UniProt: A0A089M6G0
Position
complement(4153481..4155583)
AA seq 700 aa
MEKRVEMQLGGRRLVLETGRLAKQANAAVMVRYGDTSVLCTVTASSEPKDLDFFPLTVNY
EERLYAVGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQD
CAPDIAAMIGTSAALSISDVPFDGPIGGVAVGRINGEFIINPDVAQQAASDIYVVVAGTK
DAIMMVEAEANEVPEDVMLEAIMFGHDEIRKIVAVIQELVAAAGKEKMAVKLHTVNSEVN
AEVRAYAQIRLVEAVKIAEKHARQDAIDLINNETVEYFAEKYIETPELLKDVKEVLHDIV
KDEVRRLITHDKIRPDGRKLDEIRPIECDTALLPRTHGSGLFTRGQTQILSVCTLGALGD
VQILDGIDPAETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEF
PYTIRLVSEAIESNGSTSQASICASILAMMDAGVPIKAPVAGVAMGLIKDGEHVSILTDI
QGMEDHLGDMDFKVAGTAKGVTAIQMDIKIAGIDRKILQDALQQAKEGRMFILGKMKEAI
SEPRPSLSKYAPKIIIININPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIGSSD
EAMIQKARGIIEGIVREVQVGEIYVGTVRRIEKFGAFVELIPGKDGLVHISQLSTERVAK
VEDVVAIGDTITVKVTEIDQQGRVNLSRKAVLTAEGAAKA
NT seq 2103 nt   +upstreamnt  +downstreamnt
atggaaaaacgtgtagaaatgcagcttggcggaagacgccttgtactggaaacgggccgc
cttgccaaacaggcaaatgctgcagtcatggtgcgctatggtgacacttcagtattgtgt
acggttacagcctccagcgaacccaaagatctggattttttcccgcttacggttaactat
gaggaaagattatatgcagttggcaaaattcctggaggtttcatcaaacgtgagggcaga
cccagtgagaaagcgattctgtccagccgtctgacagaccgtccaattcgcccgctgttt
ccggaaggattccgtaacgatgtgcaggtactgaatctggtaatgagcgtggatcaggat
tgtgcgccggatattgccgctatgattggtacttccgctgcgctcagcatctccgatgtg
ccgtttgacggaccgatcggtggtgtggcagtaggccgtattaacggtgaattcatcatt
aatccggacgttgcgcagcaagcagcgagcgacatttatgtagtcgtagccggaaccaaa
gacgccatcatgatggtggaagctgaagccaatgaagtgcctgaagatgtcatgctggaa
gctatcatgttcggacatgatgaaatccgcaagatcgtagctgtgattcaagaacttgtt
gccgctgccggcaaagaaaagatggcagtgaagctgcacacggtaaatagcgaagtgaac
gcagaggtacgcgcttatgcgcagatccgtctggtcgaagctgtgaaaattgccgagaaa
catgcccgccaggatgccatcgacctgatcaacaatgaaacggtggagtatttcgcagag
aaatacatagaaacaccggagcttctgaaggatgtcaaggaagtgctgcatgatatcgtc
aaggatgaagtaagacgtctgatcacccatgacaagatccgtccggatggacgcaagctg
gatgaaatccggcccattgaatgcgatacggctttgctgccgcgtactcatggttccgga
cttttcacgcgcggacagactcagatccttagcgtatgtacgcttggtgcgcttggagat
gtgcagatcctggacgggattgatccggccgagacgaaacgcttcatgcaccactacaac
ttcccgccgttcagcgtaggggaagcccgtccgctcagagcaccgggacggcgcgagatt
ggacacggagcccttggggagcgtgcattgtccaaagttatacctagtgaaactgaattc
ccgtacacgattcgtctggtatcagaagctattgaatccaacggctctacttcccaagcg
agtatttgcgccagcatcttggccatgatggatgcgggtgtgccgattaaggcgcctgta
gccggtgtagccatgggtctgatcaaagacggagagcatgtctcgatcctgaccgatatt
caggggatggaagatcatcttggcgatatggacttcaaggtggcaggtacggctaaaggg
gttacagcgattcagatggatatcaagatcgccggcattgaccgcaagattcttcaggat
gcgctgcagcaggccaaagaaggacggatgttcatcttgggcaaaatgaaggaagctatc
tccgagcctagaccaagcctgtccaaatatgctcccaaaatcattatcatcaacatcaat
ccggacaaaatccgtgatgtcatcggcgcaggtggcaagattatcaataaaatcattgaa
gaaaccggcgtgaagatcgatatcgagcaggatggccgtgtcttcattggctcttcggac
gaagcgatgattcaaaaagcccgcggtattatcgaaggcattgtacgtgaagtacaggtc
ggtgaaatatatgtgggtacagtcagacgcatcgaaaagtttggtgcctttgtcgaattg
attccaggcaaagacggactggtgcatatttcacagctgtctactgaacgtgtagccaaa
gtggaagatgtagtggctatcggtgacacgattactgtcaaagttactgaaatcgaccag
cagggccgcgtaaatttgtcacgcaaagcagtgctcactgcagagggtgcagctaaggct
tag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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