KEGG   Pedobacter ginsengisoli: CPT03_00660
Entry
CPT03_00660       CDS       T05145                                 
Name
(GenBank) RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
pgs  Pedobacter ginsengisoli
Pathway
pgs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pgs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CPT03_00660
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pgs03019]
    CPT03_00660
Enzymes [BR:pgs01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CPT03_00660
Messenger RNA biogenesis [BR:pgs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CPT03_00660
SSDB
Motif
Pfam: DEAD ResIII Helicase_C AAA_11 AAA_22 AAA_30
Other DBs
NCBI-ProteinID: ATP55081
UniProt: A0A2D1U0G3
Position
164195..165487
AA seq 430 aa
MSLDKLKLSKPLVTAMNDAGYISAKEIQAKALSRIIGGQDIIAVGPEGCGKTTTYVLGVL
MRLKYSTDEAPKVLILVPDQERVLAVIEEFRLLSKNRNLRIIGLYGTGGMDEVIQELLDG
IDIVVATPTRARAVYLKLGLNLNRLQMLIVDDAEVIVKQGMQLPVCELARSAGKVQHLIF
TTVVHDKLNHMIDQFMNFPATLEVEDLGDSKAVTHELLLYQVPNFKTKVNLLNLLLRDDE
VFDKVVVFVNSRLTAQKLSKSLHSAKPGVVSLLNPLFFDEEGFDHLDDFKDTPEARVLIV
ANEGSANVNLSGIPFIFHFEVPEQKELFLSRVVKSGSEDIVAITFATDMELVDLRKIEQS
LGAKIPVMDLPEDLVVDKVVKTTAKIKTVKENTDLPKGGGAFHEKKESNAKDYNYGIGQK
AKMTMKKKHS
NT seq 1293 nt   +upstreamnt  +downstreamnt
gtgtcgttagataaattaaaactaagcaagccgctggtaacagcaatgaatgatgccgga
tatatttctgctaaagaaattcaggctaaagccttatccagaataattggcgggcaagat
attattgctgttggaccagagggctgtggtaaaactacaacctatgtgcttggggtttta
atgcgtttaaaatacagtaccgatgaagctcctaaagtattgattcttgttcctgatcag
gaacgtgtacttgctgtaattgaagagttcaggcttttaagtaaaaaccgcaacctgcgc
attataggtttgtatggcactggagggatggatgaagtgatacaggaactgcttgatggg
attgatattgttgttgctacacctacaagagcacgtgcggtatatttaaagcttggcctt
aacttaaacagattacagatgctgattgttgatgatgccgaggtaattgtaaaacaaggg
atgcagttgcctgtttgtgaattggcaagaagtgcaggtaaggttcagcatttaattttc
actactgttgttcatgataaactgaatcatatgattgatcagtttatgaattttcctgcc
actttagaggttgaagatttaggggacagtaaggcggtaacacatgagcttttgttatat
caggttcctaattttaaaacgaaagtaaatttattgaacctgctgcttcgtgatgatgag
gtgtttgataaggtagtagtatttgtgaattcgagattgaccgcgcaaaagcttagcaaa
agtttacattcggcaaaacccggtgttgtttctttgttgaaccctttgttttttgatgaa
gaaggatttgatcatttagatgattttaaagatacacctgaagcgagggttttaattgta
gcaaatgagggttcagcaaatgtaaacctatcgggtattccatttatattccatttcgag
gttcctgaacaaaaagaattgtttttaagtcgtgtagtaaaatcaggatcggaagatatt
gtagccattacttttgctactgatatggagttggtggatttaagaaaaattgaacaatca
ttaggggctaaaattccggttatggatttgcctgaagatttggtagttgataaagttgtt
aaaactacagcaaagattaaaactgtaaaagaaaatacagatttacctaaaggcggtggt
gcttttcatgaaaaaaaggaaagcaatgctaaagattacaactacggaatagggcagaag
gctaagatgactatgaaaaagaaacacagttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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