KEGG   Pseudopodoces humilis (Tibetan ground-tit): 102104738
Entry
102104738         CDS       T02921                                 
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain
  KO
K06236  collagen type I alpha
Organism
phi  Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi04510  Focal adhesion
phi04512  ECM-receptor interaction
phi04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:phi00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    102104738 (COL1A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    102104738 (COL1A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    102104738 (COL1A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:phi00536]
    102104738 (COL1A1)
Glycosaminoglycan binding proteins [BR:phi00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   102104738 (COL1A1)
SSDB
Motif
Pfam: Collagen COLFI VWC TILa
Other DBs
NCBI-GeneID: 102104738
NCBI-ProteinID: XP_014116476
Position
Unknown
AA seq 1453 aa
MFSFVDSRSLLLIAATVLLTRGQGEEDIQTGSCIQDGLTYNDKDVWKPEPCQICVCDSGN
ILCDEVICEDTSDCPNAEIPFGECCPICPDTDASPAYPESPGVEGPKGDTGPKGDRGLPG
PPGRDGIPGQPGLPGPPGPPGPPGLGGNFAPQMSYGYDEKAGGMAVPGPMGPAGPRGLPG
PPGAPGPQGFQGPPGEPGEPGASGPMGPRGPAGPPGKNGDDGEAGKPGRPGERGPPGPQG
ARGLPGTAGLPGMKGHRGFSGLDGAKGEPGPAGPKGEPGSPGENGAPGQMGPRGLPGERG
RPGPSGPAGARGNDGAPGAAGPPGPTGPAGPPGFPGAAGAKGETGPQGARGSEGPQGARG
EPGPPGPAGAAGPAGNPGADGQPGAKGATGAPGIAGAPGFPGARGPSGPQGPSGAPGPKG
NTGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPAGLPGPAGERGAPG
SRGFPGADGIAGPKGPPGERGSPGPVGPKGSPGEAGRPGEPGLPGAKGLTGSPGSPGPDG
KTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKPGERGAPGPPGAVGAAG
KDGETGAQGPPGPTGPAGERGEQGPAGAPGFQGLPGPAGPPGEAGKPGEQGVPGDAGAPG
PAGARGERGFPGERGVQGPPGPQGPRGANGAPGNDGAKGDAGAPGAPGNQGPPGLQGMPG
ERGAAGLPGAKGDRGDPGPKGADGAPGKDGLRGLTGPIGPPGPAGAPGDKGEAGPPGPAG
PTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGETGDAGAKGDAGPPGPAGPTGAPG
PAGAVGALGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNIGLPGPPGPSGKEGGKGPRG
ETGPAGRPGEPGPAGPPGPPGEKGAPGADGPIGAPGTPGPQGIAGQRGVVGLPGQRGERG
FPGLPGPSGEPGKQGPSGSPGERGPPGPMGPPGLAGPPGEAGREGSPGAEGAPGRDGAAG
PKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPQGPAGPPGPAGARGPAGPQG
PRGDKGETGEQGDRGMKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAAG
KDGLNGLPGPIGPPGPRGRTGDVGPVGPPGPPGPPGPPGPPSGGFDFSFLPQPPQEKAHD
GGRYYRADDANVMRDRDLEVDTTLKSLSQQIENIRSPEGTRKNPARTCRDLKMCHGDWKS
GEYWIDPNQGCNLDAIKVFCNLETGETCVYPTQASIARKNWYLSKNPKEKKHVWFGESMS
DGFQFEYGGEGSDPADVAIQLTFLRLMATEASQNVTYHCKNSVAYMEQASGNLKKALLLQ
GANEIEIRAEGNSRFTYGVTEDGCTSHTGAWGKTVIEYKTTKTSRLPIIDLAPMDVGAPD
QEFGIDIGPVCFL
NT seq 4362 nt   +upstreamnt  +downstreamnt
atgttcagctttgtggattctcggtcactgctgttgatagcagcgaccgtcctactcacc
cgcgggcaaggagaggaagacatccaaaccgggagctgcatccaggatgggctcacgtac
aacgacaaggacgtgtggaaaccagaaccgtgccagatctgcgtctgcgacagcggcaac
atcctgtgcgacgaggtgatctgcgaggacacctccgactgccccaacgccgagatcccc
ttcggagagtgctgccccatctgtcccgacaccgacgcctcccctgcctacccagagagt
cctggagtagagggtcctaaaggagacaccggccccaaaggagacaggggactccccggc
ccccctggcagagatggaattcctggacagcccggactcccgggaccccccggccccccc
ggccccccaggcctcggcggaaacttcgctccccaaatgtcctacggctacgacgagaag
gccggaggcatggccgtgcccgggcccatgggcccagctggtccccgtggtctccccggc
cctcccggtgctcccggtcctcaaggtttccaaggtccccctggagaacctggagagcct
ggtgcttctggtcccatgggtccccgaggtcccgctggcccccctggcaagaacggagat
gacggtgaagctggcaagcctggccgccccggagagcggggtccccccggcccccagggc
gctcgaggtctccccggcaccgccggcctgccgggcatgaagggacacagaggtttcagt
ggtctggatggtgccaagggtgagcctggacctgctggccccaagggagagcccggcagt
cccggagagaacggagctcctgggcagatgggtcctcgtggtcttcccggcgagagaggc
cgtcccggcccatctggcccagctggcgctcgcggcaatgacggtgctcccggtgctgcc
ggtccccccggtcccaccggtcccgctggtcctcccggcttccccggtgccgctggtgct
aagggtgagaccggtccccagggagctcgtggcagcgaaggtccccaaggtgctcgtggt
gagcccggtccccccggccctgctggcgctgccggtcctgctggcaaccccggtgctgac
ggccaacccggtgccaagggcgccaccggcgctcccggcattgctggcgctcccggcttc
cccggtgcccgcggtccctccggaccccagggccccagcggtgcccccggccccaagggt
aacaccggtgagcccggtgctccaggcaacaagggtgacaccggtgccaaaggcgaaccc
ggtcccgctggtgtccaaggcccccccggccccgctggggaggaaggcaagagaggagcc
cgtggtgagcccggccccgccggcctgcccggccccgctggcgaacgtggtgctcccggc
agccgcggtttccctggcgccgatggcatcgccggtcccaagggtccccccggcgagcgc
ggctcccccggccccgtcggccccaaaggatctcctggtgaagctggacgccccggggaa
cccggactccccggtgccaagggtctgactggaagccccgggagccccgggcccgacggc
aagaccggcccccctggtcccgctggtcaagacgggcgccccggcccccccgggcccccc
ggagcccgaggccaggccggcgtgatgggattccccggtcccaaaggtgctgcgggcgaa
cccggcaaacctggcgagagaggagctcccggtccccccggagccgtgggtgctgctggc
aaagacggtgaaaccggtgcccaaggtccccccggccccaccggtcccgctggagaaaga
ggtgaacaaggtcccgctggtgctcctgggttccagggtctgcccggccccgctggcccc
cccggcgaggctggcaagcccggtgagcagggtgtccccggagacgccggagcccccggt
cccgccggtgccaggggtgagagaggattccctggagaacgcggtgtccaaggtcccccc
ggtccccaaggtcctcgtggtgctaacggtgctcccggtaacgatggtgctaagggcgat
gctggtgctcccggagcccccgggaaccaagggccccccggtctgcagggtatgcccgga
gagcgtggtgctgccggcctgccaggcgccaagggtgacagaggtgaccccggtcccaaa
ggtgctgatggcgctcctggcaaggacggtctccggggcctgaccggtcccatcggcccc
cccggccccgctggtgctcctggtgacaagggtgaagccggtccccccggtcctgctggt
cccactggtgcccgtggtgctcccggtgaccgcggcgagcccggccctcccggtcctgct
ggatttgctggcccccccggcgctgacggccagcctggtgctaaaggtgaaactggggat
gctggagccaagggtgacgccggtccccccggccccgctggccccactggtgctcccgga
cctgctggcgctgttggtgctctcggtcccaaaggtgctcgcggaagcgctggaccccct
ggtgctactggtttccctggtgctgctggaagagttggaccccccggcccctcaggcaac
atcggcctccccggcccgcccggccccagcgggaaggaaggcggcaaaggaccccgcggt
gagaccggccccgctggccggcccggagagccgggacccgccggtccccccggtcccccc
ggagagaagggagcccccggcgctgacggccccatcggcgctcccggcacgcccggaccc
caaggtatcgccggccagcgcggtgtcgttggtctccccggccagagaggcgagagaggc
ttccctgggctgcccggcccctccggtgaacccggtaaacaaggtccctccggctccccc
ggcgagcgcggcccccccggccccatgggcccccccggcctggcaggaccccccggagaa
gccggacgcgagggctctcccggtgctgaaggtgcccccggccgtgacggtgctgctggt
cccaagggcgatcgtggtgagaccggccccgccggccctcccggtgctcccggtgccccc
ggtgcccccggccccgtcggtcctgctggcaagaacggagatcgtggtgagaccggtccc
caaggtcccgctggcccccctggtcctgctggtgctcgtggtcctgctggtccacaaggt
ccccgtggtgacaaaggtgaaaccggcgaacagggtgacagaggcatgaagggtcacaga
ggcttctccggtctccagggcccacctggtcctcccggctctcctggtgaacaaggtcct
tctggtgcttctggtcccgccggtccccgaggtcctcccggctccgccggtgctgctggc
aaggacggtctgaacgggctgcccggccccatcggcccccccggcccccgcggccgcacc
ggagacgtcggtcccgttggtccccccggcccccccgggccccccggtcctcccggccct
cccagcggcggattcgacttcagcttcctgccccagccgccccaggagaaggctcacgac
ggcggccgctactaccgggccgatgatgccaacgtgatgcgcgaccgagacctggaggtg
gacaccaccctcaagagcctgagccagcagatcgagaacatccgcagccccgagggcacc
cgcaagaaccccgcccgcacctgccgcgacctcaagatgtgccacggcgactggaagagc
ggcgagtactggatcgaccccaaccaaggctgcaacctggacgccatcaaggtcttctgc
aacctggagacgggcgagacgtgcgtgtacccgactcaggcgtccatcgcccgcaagaac
tggtacctcagcaagaaccccaaggagaagaaacacgtctggttcggcgagagcatgagc
gacggcttccagttcgagtacggcggcgagggctcggacccggcggacgtggccatccag
ctgaccttcctgcgcctcatggccaccgaggcctcccagaacgtcacctaccactgcaag
aacagcgtggcctacatggagcaggccagcggcaacctgaagaaagctctgctgctgcag
ggcgccaacgagatcgagatccgcgccgagggcaacagccgcttcacctacggcgtcacc
gaggacggctgcacgagtcacacgggcgcctggggcaagacagtcatcgagtacaagacg
acgaagacctcgcgcctgcccatcatcgatttggctcctatggacgtcggcgctccggac
caggaattcggcatcgacatcggccccgtgtgcttcttgtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (44)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (56)   

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