KEGG   Pangasianodon hypophthalmus (striped catfish): 113536150
Entry
113536150         CDS       T05759                                 
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
  KO
K06236  collagen type I alpha
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04510  Focal adhesion
phyp04512  ECM-receptor interaction
phyp04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    113536150 (col1a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    113536150 (col1a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    113536150 (col1a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:phyp00536]
    113536150 (col1a2)
Glycosaminoglycan binding proteins [BR:phyp00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   113536150 (col1a2)
SSDB
Motif
Pfam: Collagen COLFI
Other DBs
NCBI-GeneID: 113536150
NCBI-ProteinID: XP_026785765
Position
Unknown
AA seq 1356 aa
MLSFVDTRILLLLAVTSYLASCQSAYLKGPRGDKGPRGDRGPKGPDGKPGKPGLPGPAGP
PGPPGLSGNFAAQYDGSKGPDPGPGPMGLMGPRGPSGPPGAPGPQGLQGHAGEPGEPGQA
GPVGPRGPPGPPGKAGEDGNNGRPGQPGDRGASGPQGARGFPGTPGLPGMKGHRGYNGLD
GRKGEPGESGAKGENGAHGSNGTPGQRGARGLPGERGRVGPSGPAGARGADGNTGPAGPA
GPLGSAGPPGFPGAPGPKGEIGPAGPSGPAGPQGQRGEPGTNGVAGPVGPPGNPGANGLN
GAKGAAGAAGVAGTPGFPGPRGGPGPQGPAGASGPRGLTGDPGPVGVKGDSGVKGEPGSP
GAQGLTGAAGDEGKRGQTGEQGSVGPAGPRGPRGAAGTRGLPGVAGRGGPMGMPGARGST
GAPGIRGPAGDSGRPGEAGLVGARGLPGSPGSAGPQGKEGPAGPSGQDGRGGPPGPTGPR
GQPGNIGFPGPKGPSGEPGKPGEKGPAGAPGLRGPPGPDGNNGPAGPVGVVGGAGEKGEA
GPAGAPGFQGLPGPAGPVGETGKPGDRGIPGDQGLSGPAGGKGERGNPGPAGAVGAQGPI
GPRGPSGPPGPDGNKGEPGAAGLPGAAGPQGPVGMPGERGAAGTPGPKGEKGESGYRGLE
GNAGRDGARGAPGPSGPPGPAGANGDKGESGSAGPAGPAGARGSPGERGEAGPAGPPGFA
GPPGADGQSGAKGERGPAGGKGDVGPTGPAGPAGSPGPAGPSGPSGPPGARGDTGPTGLT
GFPGAAGRVGPPGPAGIAGPPGSTGPAGKDGPRGPRGDVGPAGPQGENGLIGPPGPSGER
GAPGESGAKGPQGISGPSGLIGPPGITGLPGARGERGTPGGIGAVGEPGRVGPPGAPGPR
GPGGNIGLPGMTGPQGEAGREGSPGNDGPPGRPGLAGIKGDRGEPGAPGPLGIAGASGPL
GPAGAAGRPGNRGEAGPSGAVGPAGPAGARGAPGPAGPRGEKGVAGERGERGMKGLRGHP
GLQGMPGPSGPSGDSGPAGPAGPSGPRGPAGPSGPAGKDGRPGTAGPVGLAGHRGPPGQV
GPVGPPGSPGVPGPPGPAGGGYDISGGYDEYRADQAALRAKDYEVDATIKSLNTQIDNLL
SPEGSKKNPARTCRDIRLSHPDWTSGFYWIDPNQGCTMDAIKAYCDFTTGQTCIYAHPES
IARKNWYRSTQEKKHVWFGETINGGTEFGYNDETLSPQSMATQLAFMRLLANQAVQNITY
HCKNSIAYMDGENGNLKKAVLLQGSNDVELRAEGNSRFTYSVLEDGCTKHTGQWSKTVIE
YRTNKPSRLPILDIAPLDIGGANQEFGLDIGPVCFK
NT seq 4071 nt   +upstreamnt  +downstreamnt
atgctcagctttgtggatacccggattctgttgctgcttgcagtgacatcgtacctagcg
tcatgccaatcggcttatctgaagggcccaaggggagataaaggacctagaggtgacagg
ggtcctaaaggacctgatggcaaacctggcaaacctggacttcctgggcctgctggcccc
cctggcccccctggtcttagtggaaactttgctgctcagtatgatggctctaaaggacct
gaccctggccctggacctatgggtttgatgggacctcgaggccctagtggaccacctggt
gcccctggacctcagggactccaaggacatgctggcgagcctggagagcctggacaggct
ggaccagttggacctcgtggaccccctggacctcctggcaaggctggtgaagatggtaac
aatggcagacctggacagcctggagacagaggcgcatctggcccccagggtgctcgtggt
ttcccaggaactcctggacttccaggcatgaagggacacagaggctacaatggtcttgat
ggacggaaaggagagcctggtgaatctggagccaagggtgagaacggagctcatgggtca
aatggaacccctggacaaagaggtgcacgtggtctgcctggtgagagaggtcgtgttggt
ccttctggtccagctggtgcccgtggtgctgatggtaacactggtcctgctggccctgct
ggtccacttggatctgctggccctccaggtttccctggagcccctggacctaaaggagag
atcggacctgctggtccctctggcccagctggacctcaaggacagagaggagagcctgga
acaaatggtgttgctggcccagttggtcctcctggtaaccctggtgctaacggtctcaac
ggtgctaagggagctgctggtgccgctggagttgctggtacccctggtttccctggtcca
agaggaggccctggcccccagggacctgctggagcttctggccccagaggccttactggt
gaccctggtcccgtcggagtgaagggagattctggtgtcaagggtgagcctggtagccct
ggcgctcaaggtctcactggtgctgctggtgatgagggcaagaggggccaaactggtgag
cagggatcagttggacctgctggtccacgtggacccagaggagccgctggaactcgtggt
cttcctggtgtggctggtagaggaggaccaatgggcatgcctggtgcaaggggttctact
ggtgctcctggtatacgcggacctgctggtgactctggccgtcctggtgaggctggtctg
gttggagccagaggtctccctggtagccctggaagtgctggaccccaaggaaaggaggga
cctgctggtccttccggtcaagatggccgcggtggacctcctggcccaactggacccaga
ggccagcccggtaacattggattccccggccctaaaggaccttctggtgagcctggcaaa
cccggagagaagggacccgctggtgctcccggtctgagaggcccccctggtcctgatggt
aacaatggacctgctggtcccgttggagttgttggtggtgctggtgagaagggagaggca
ggccccgcgggtgctcctggtttccagggtcttcctggacctgctggacctgttggtgag
actggcaagcccggagacagaggtattcctggagaccaaggtctctctggacctgctggt
ggcaagggagagcgtggtaaccccggacctgctggtgccgttggcgcccagggacccatt
ggtcctcgtggaccttctggtcctcctggccctgatggaaacaagggtgagcctggtgct
gctggtcttcctggtgctgcaggtccccagggacctgttggcatgcctggtgagcgtggt
gctgctggtactcctggacccaagggtgagaagggtgagtctggatacagaggcctagaa
ggcaatgctggaagagatggtgcacgtggtgctcctggacccagtggacctcctggaccc
gctggtgctaatggtgataagggtgagagtggttccgctggtcctgctggccctgctggt
gctcgtggttctcccggagaacgtggtgaggctggccctgctggacctcctggatttgct
gggcctcctggtgctgatggccagtctggagctaaaggtgagagaggtccagctggtgga
aagggtgatgttggacctactggccctgctggtcctgctggtagccccggacctgccggt
ccctccgggccttctggcccccctggtgctcgtggtgatactggtcccactggtttgact
ggtttccctggtgctgctggaagagttggtcctcctggtcctgctggtattgctggacct
cctggttccactggtcccgctggaaaggatggtcctcgtggtcctcgtggtgatgttgga
cctgctggaccacagggagagaatggcctgattggacctcctggcccatctggtgagagg
ggagcccctggagagagtggtgctaagggacctcagggtatttctggacctagcggtctg
attggacctcctggaatcactggtcttcccggcgccagaggtgaacgtggtactcctggt
ggtattggcgctgtcggtgagcctggtagagtcggccctcctggtgcccctggtccccgt
ggtccaggtggtaacattggtctgcctggtatgactggtcctcagggagaggctggacgt
gagggtagccctggtaatgatggacctcctggccgtcctggtcttgctggtattaagggt
gaccgtggagagcctggagctcctggccctcttggaattgctggtgcttctggaccccta
ggaccagctggtgctgctggcagacctggaaaccgtggtgaggctggaccatctggagct
gttggaccagctggccctgccggtgcaagaggtgcccccggccctgctggaccccgtggt
gagaagggtgtggctggagagaggggagagagaggcatgaagggactgcgtggacatcct
ggtcttcagggaatgcctggacccagcggacctagtggtgatagtggcccagctggtcct
gctggaccttctggtcccagaggccctgctggtcccagtggcccagctggtaaggatggt
agacctggcactgctggtcctgttggacttgctggacatcgtggtccccctggacaagtt
ggaccagttggacctcccggatctcctggtgtccctggaccccctggtcccgctggtggt
ggatatgatatttctggtggctatgatgagtacagagctgaccaggctgctctcagggct
aaggactacgaggtggatgccaccatcaagtccctaaacactcagatcgacaacctgctc
tcacctgagggctccaagaagaaccctgcccgcacctgccgtgacatcaggctcagccac
cctgactggaccagcggattctactggatcgatcccaaccaaggctgcaccatggatgcc
atcaaggcctactgcgacttcaccacaggtcagacctgtatctatgcccaccctgagagc
attgcacgcaagaactggtacagaagtacccaggagaagaagcatgtctggttcggcgag
accatcaatggtggcaccgagtttggctataatgatgagacccttagcccacagtccatg
gctacacagctggccttcatgcgtctgctagccaaccaggctgtccagaacatcacctac
cactgcaagaacagcattgcctacatggacggtgagaatggcaacctgaagaaggctgtc
ctgctccagggctccaatgatgtggaactccgggcagagggcaacagccgcttcacctac
agcgttctggaggatggctgcactaaacacactggccagtggagcaagacagtcattgaa
tacagaacaaataaaccatctcgcctgcccatcctcgacattgcacctttggacattggt
ggcgctaatcaagaatttggtctggacattggcccagtctgtttcaaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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