KEGG   Pirellula sp. SH-Sr6A: VN12_21035
Entry
VN12_21035        CDS       T04360                                 
Symbol
uvrA_1
Name
(GenBank) UvrABC system protein A
  KO
K03701  excinuclease ABC subunit A
Organism
pir  Pirellula sp. SH-Sr6A
Pathway
pir03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    VN12_21035 (uvrA_1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pir03400]
    VN12_21035 (uvrA_1)
DNA repair and recombination proteins [BR:pir03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     VN12_21035 (uvrA_1)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      VN12_21035 (uvrA_1)
SSDB
Motif
Pfam: UvrA_inter ABC_tran UvrA_DNA-bind SMC_N AAA_29 nSTAND1 AAA_16 RsgA_GTPase AAA_21 AAA_23 AAA_25 Viral_helicase1 ATPase DnaJ_CXXCXGXG
Other DBs
NCBI-ProteinID: AMV34623
UniProt: A0A142Y5X2
Position
complement(5150126..5156179)
AA seq 2017 aa
MATTRDLPIVVRGAREHNLQNVDLTLARNQLICFTGVSGSGKSSLAFDTLYAEGQRRYLE
SLSTYARQFVGQIPKPDVDYLSGLSPSISISQKSTGNNPRSTVGTITEIHDFLRVLFARV
GTGFCPDCQIQISSQTRDQMVEKIMGLDRSKPYLFLAPIVRGQKGEHRDLFEDLRKQGFN
RARIDQRVYLLSEPPSLERQIKHHVELVVDRISVEASSRQRIAEAVDTAIRFGEGTLLLA
PMVPGEDDTATYDTADDIVFSTSYACASCGKSYPPPSPQLLSFNSPQGACQECEGLGESF
RYDPELLIQLPDKSIKNGAIPLIGKHSEMTRWYRRSISLYCATIEGSLGLETGSLLSTPW
SKLSEAEQEALLNGYQGESVRVKGKALHGQDFRGIVPELRDTYRATSNPFTRANHERCMR
IGRCPACDGSRLNAQARSIRLKTHAKGFHNVPWYSIGGVSRLSIDRCSEFFEGLELSPLQ
WQIGEEAVKEIRARLRFLIDVGLGYLSLDRTAPTLSGGESQRIRLASQIGSGLVGVLYVL
DEPSIGLHPRDNDRLLASLQRLRDLGNTLIVVEHDEDTMRIADTIVDFGPGPGVRGGKLI
ASGTLDDIISNDESLTGGFLNRTRRIRSPESRRPGNGKKIKILGAEHHNLKNLDVDIPLG
CFIAVTGVSGSGKSSLITEILSPAIRGVFQRGVEESGKHREIQGIEHIDKVIDIDQSPIG
RTPRSNPATYVKVFDEIRSLFAELPESKRRGFDAGTFSFNTEQGRCSACEGHGAVRLDME
FLADLWVPCAVCEGKRYDRATLQVEYKGKSIADCLELDVQQALEHFSEFPKIASKLETLH
GVGLDYLKLGQPSPTLSGGEAQRIKLSKELSRRSTGKTVYVLDEPTTGLHFYDIDLLLGV
LQSLVELGNTVIVVEHNLDLIQAADWVIDLGPEGGEAGGQVVCTGTPEEVSRCKASHTGK
ALARYFESHRKVSKKKKATPKTKTKKEQKDAPALQDIHVVGAEHHNLKNVDLTIPRNRMT
VFCGQSGSGKTSMAMDTLYAEGQRRFVESLSPYVRQFVGQMPKAKVARVDGLSPSVAIEQ
RNLSHTPRSTVGTVTEIYDYVRVLFARLAQMHCTQCDAPVSSQTSDQILDRIRDLAAAQG
TGRALLLAPVAPNANTDLTSFLTSLRQQGFVRMRINGKVYPLDDIPTLQYQSRNEFQLVV
DRLQWDRLDPKSLRDSVDTALTMGNGILQIAMVDDSRSEVHWEVKTMSLQLACHACGISF
QPLTPHRFSFNSQVGWCEACLGIGSMRGIDPNAAFETEKSLLEGGLPIWPDLQSPLSRAM
LYALGRETGLPLDRPIKQLTAGQRAMLLKGLPNRQFVVTQGDLAAAIDPNAAPNSKVYMT
FAYRGVYAAVESASSSNIRDRYALANFINEGPCIDCGGARVCSEAAHARYRNHTISDIVK
LPIGSLNERVLSWKLSKREQKIAGELLREIQHRLQFLCDVGLEYLTLDRSANTLSGGEAQ
RIRLASQLGAGLSGVLYVLDEPTIGLHPRDNDRLIRAMKSLRDLGNTLVVVEHDREVIAQ
SDQLRDFGPASGPLGGNVVAQGTPAQIARAKNSVTGPFLSGKKKITPPSTRRVSLDDAIH
ISKHDWTDIAITPHGWLTVKGAEANSLKGIDVSIPIGCFTAVTGPSGSGKSSLINGILYP
ALARYFYATDGVPGPFREIRGHLHFKKVLKVDQSPLGASPSSNPATYTGVFDHIRQLFQR
LPEAKTRGLTAGHFSFNVSGGRCEKCEGLGQVCIQMHFLPDVWISCDACNGRRYTSEVLA
VKFKGHSIDDVLNMSIGEARDLMSEIPKIHHMLSTLCDVGLDYLALGQSAPTLSGGEAQR
VKLATELCRPNNGKTIYLLDEPTTGLHFNDIQKLLHVLQALVDSGNTVVVIEHNLDIIQC
ADWILDLGPEAGEQGGELVFAGTPEKLIEYASNRSYGDAEGIALQVSEKKTRGRKAASKT
DIASSAKPTGHRSYTGEALREFWEGTKRPSRPPSKPR
NT seq 6054 nt   +upstreamnt  +downstreamnt
ttggcaacgacgcgtgatctgccgatcgtcgttcgcggtgctcgcgaacacaaccttcaa
aacgtagatctgacgctcgctaggaaccagctcatttgctttaccggcgtgtcgggcagc
ggaaagagttcgctcgctttcgacacattgtacgccgaggggcagcgacgctatttggag
agtctatccacttacgctcgtcagttcgtaggtcagattccgaagccggatgtggattat
ctttccggactgagcccttcgatctcgatcagccaaaagtcgactgggaataatcctcgt
tcgacggtagggacgatcaccgagattcacgacttccttcgcgttctctttgcacgagtt
ggcacgggattctgcccagactgtcagattcagatttcatcgcagactcgcgatcagatg
gtcgagaagatcatggggctcgatcgttcgaaaccctacttgtttctcgctcctattgtt
cgagggcagaagggggagcatcgggatctgttcgaggatttgcgtaaacaaggctttaat
cgagcacgcatcgaccaacgcgtgtatctcctttccgagcccccgtccctggagagacag
atcaagcaccacgtggaattggtcgtagatcgcatttccgttgaagctagcagtcggcag
cggatcgcagaagcggtggacactgcgattcgatttggtgaaggaacactcttactcgcc
cccatggtccccggcgaggacgatacggcaacctacgacacggctgacgatattgtcttt
tcgacgagttacgcgtgcgcttcgtgtggcaaatcctatcccccaccttctccgcaattg
ttgagtttcaattccccacagggggcgtgccaagaatgcgagggcttaggggaatctttt
cgttatgatcccgagctattgattcagctgccggacaaatcgattaagaacggtgcgatt
ccactgatcggcaaacacagcgagatgacgcgatggtatcgccgatcgatctccctgtac
tgcgcgacgattgagggaagcctgggattggagactgggagtctcctctcgactccttgg
tcgaaactctcagaggcggagcaagaagcgctgctcaacggttaccaaggggaatcggtg
agggtaaagggcaaagcgttacatggacaagacttccgtggaatcgtacctgagttgcgc
gatacttatcgcgcgacgtcgaatccatttacgcgtgccaaccatgagcgctgtatgcga
atcggtcggtgtccggcatgcgacggttctcgattgaatgcacaagcgagatcgattcga
ctgaagacgcacgcgaagggcttccacaacgtcccttggtattcgatcggtggcgtttcc
cgcctctcgatcgatcgatgcagtgaattttttgaaggtttggaattgagcccactccaa
tggcagattggagaggaagcggtcaaggagattcgagcgaggcttcgatttttgatcgat
gttggtctcgggtatctttcgctcgatcggacggctccgactttgtcaggcggagaatcg
cagcgtattcggcttgctagccagatcggatccggactggtaggggtgctctacgtgttg
gacgaaccgagcattgggctccacccgagggacaacgatcggttgctcgcctcgctccaa
cgtttgcgcgatctagggaatactctgatcgttgttgaacacgacgaagacacgatgcgc
atcgcggacaccatcgtcgatttcggtccgggacctggtgttcgaggggggaagctaatc
gcgtcggggacgctcgacgacattatttcgaatgacgaaagcctgacgggaggctttctc
aatcgaacccggcgcattcggtcccccgagtcgcgacggcctggaaacgggaagaaaatc
aagattctcggagcggaacatcacaatctgaagaacctcgatgttgatattccactcggg
tgcttcatcgccgtcaccggtgtgagcggcagcgggaaaagctcattgatcaccgagatc
ctatcgccagccattcggggtgtttttcagcggggtgtggaagagtctggaaagcaccgc
gaaatccaagggatcgagcatattgataaggtcattgatatcgatcaaagtcccattgga
cggaccccgcgcagcaaccctgcaacctatgtcaaagtctttgacgaaatacgttcccta
tttgccgaattgcctgaatccaaacggcgaggattcgatgcgggcacatttagtttcaat
acggagcaaggccgatgttcggcttgtgaggggcatggagcagtacggcttgatatggag
tttctcgccgacctttgggttccctgcgcggtatgcgaaggaaagaggtacgaccgagcg
acattgcaggtggagtacaaagggaaatcgatcgccgattgcttggagctcgatgtccag
caagctctcgagcacttcagcgagtttccaaagatcgcgagcaaactagagacgttgcac
ggagtcggattggattacctcaagctggggcaaccgtccccgaccctatcggggggcgaa
gcgcaacgtatcaaattgtccaaggagctgagtcgtcgatcgacgggcaagaccgtgtat
gtgctggatgaaccgacgacgggcttgcacttctacgacatcgatttactactcggcgtg
ttgcagtccctggtggaattgggaaacacggtgatcgtcgtcgagcacaatctcgatctg
atccaagcagccgactgggtgatagacctgggaccggaggggggagaggctggtggtcag
gtcgtttgcacagggactccagaagaggtttctcggtgcaaagcgtcgcataccggaaag
gcacttgcacggtatttcgagtcgcaccgaaaagtatcgaagaaaaagaaagctacgccg
aaaaccaaaacgaagaaggaacaaaaagatgcaccggcgttgcaggatattcacgtcgtt
ggcgcggaacatcacaatttaaagaacgtcgatttgaccatcccccgcaacagaatgacc
gttttttgtggtcaaagcggcagtggaaagacgtcgatggcgatggatacgttgtatgcg
gaagggcaacgtcggtttgtggagagtttgagcccgtatgtacggcagtttgtcggtcaa
atgcccaaagccaaggttgctcgggtcgatggtttgagtccctccgtggccatcgagcag
cggaatctatcgcatacaccgcgcagcacggtcgggacggtaacggagatttacgattac
gttcgtgtgttgtttgcccgtcttgcccagatgcattgcacgcagtgcgatgcgccggtg
agcagccagaccagcgatcaaatcctcgatcgcattcgagacttagcggctgctcaaggc
actggccgggcattgctgctcgccccggtcgccccaaatgcaaacaccgacctcacgagc
ttcctcacatcgctccgccagcaaggcttcgtgcggatgcggatcaacggaaaggtgtat
ccgctcgacgatatacccaccttgcaataccagtcgcgaaatgaattccagttggtggtc
gaccggttgcagtgggatcggctcgatcctaaaagtttgagggacagcgtcgatacggcc
ctcacgatgggaaatgggattttacaaatcgccatggtcgatgactcaaggtcagaggtg
cactgggaggtcaaaacgatgtcgctgcagctcgcctgccacgcgtgcggcatctcattt
cagcccctgacaccgcacagattttctttcaattctcaggtcggctggtgcgaagcctgc
ctgggaatcggttcgatgcgcgggatcgatcccaatgcggctttcgaaacagagaagagt
ttattggaaggaggattgccaatttggcccgatcttcaatctcccctctcgcgagccatg
ttgtatgcgttggggcgtgagaccggattgccgttggatcgacccatcaaacagttaacg
gccgggcaacgcgctatgctcctcaagggccttccaaatcgtcaatttgttgtcacccaa
ggggatttggcagcggcgatcgatccgaatgcggctccgaattcgaaggtgtatatgaca
tttgcctatcgaggcgtttacgcggctgtggaatccgcatctagttcgaacatccgcgat
cgatacgcgttggcaaacttcatcaacgagggaccatgcattgattgtggtggtgcacgg
gtttgttccgaagcagcccacgcccgatatcgcaatcatacgatctctgacattgtcaaa
ttaccaattggatcgttaaatgaacgggtgctcagttggaagctttcgaagcgcgagcaa
aaaattgcaggcgaacttctgcgcgaaatccagcatcgcttgcaatttctatgcgatgtg
gggttggagtatttgaccctagatcgctcggcgaacaccttgagcggaggcgaagcacaa
cgtatccggttggccagtcaactcggcgccggattgagcggcgtcctttatgttttggat
gagccgaccatcgggctgcatcctcgtgataacgatcgactgattcgggccatgaagtcg
cttcgggacctggggaataccttggtcgttgttgagcacgatcgcgaggtgattgcgcaa
agcgatcagttgcgagactttgggccggcgtccgggccgcttggaggcaatgtggtcgcg
cagggtactcccgcacaaatagcccgcgcgaagaactcggtaacgggaccttttctgagt
ggtaaaaagaagatcacacccccttcaacccgtcgtgtttccctcgacgatgcgatccac
atatccaagcacgattggaccgatatcgcgatcacaccgcacggttggttaacggtgaaa
ggagccgaagcgaactctctcaagggaatcgatgtgtcgatcccgatcggttgtttcacc
gcggtgacgggtccgagcggaagtggcaagagtagcttgatcaacggaattctgtacccc
gccttggcacgatacttttacgctacggatggtgtgccgggcccctttcgcgaaatcagg
ggacatttgcattttaagaaagtgctcaaggtagatcagtcgccactgggggcgtctccg
tcaagcaatccagcgacctacaccggagtctttgatcatattcggcagctatttcaacga
ttgccggaagcgaaaaccagaggtctcacagccggtcatttcagcttcaacgtttcgggc
gggcgatgcgagaagtgcgaggggttagggcaagtatgtattcagatgcactttctaccc
gatgtttggatttcatgtgacgcctgcaacggacggcggtatacctccgaggtcctcgcc
gtgaaattcaaagggcattcgatcgacgatgtgctcaacatgtcgatcggggaagcgaga
gatttgatgagcgagatcccgaagatccatcacatgctttcaaccctctgcgatgtcggg
ctggactatctcgcgttggggcaaagcgccccgacgttgagtggtggtgaggctcagcgg
gtcaaattggcaaccgagctttgtcgccccaacaatgggaagaccatttatcttctcgat
gaaccaacgaccggattgcacttcaatgacatccagaagctccttcacgtcttgcaagcc
ttggtggatagcgggaacacggttgtcgtaatcgaacacaacctcgatatcatccaatgc
gccgactggatcctcgacctcggcccggaggcaggcgagcaaggaggagaacttgtcttc
gccggtacccctgaaaaactgatcgaatatgcttcgaatagaagctatggcgatgcggaa
gggatcgctttgcaagtttccgaaaagaagacaaggggacgcaaagcggcttcgaaaacc
gacattgcatcatccgccaaaccgacgggccaccgcagttatacgggcgaagcgttgcga
gaattttgggaggggaccaagcggccgtcccgaccgccgagcaagcctcgatga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (22)   

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