KEGG   Paenibacillus sp. JDR-2: Pjdr2_5720
Entry
Pjdr2_5720        CDS       T00977                                 
Name
(GenBank) ATP-dependent DNA helicase PcrA
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
pjd  Paenibacillus sp. JDR-2
Pathway
pjd03420  Nucleotide excision repair
pjd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pjd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Pjdr2_5720
   03430 Mismatch repair
    Pjdr2_5720
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pjd03400]
    Pjdr2_5720
Enzymes [BR:pjd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Pjdr2_5720
DNA repair and recombination proteins [BR:pjd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Pjdr2_5720
   MMR (mismatch excision repair)
    Other MMR factors
     Pjdr2_5720
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 PcrA_UvrD_tudor UvrD_C_2 Viral_helicase1 AAA_30 AAA_11 ResIII AAA_22
Other DBs
NCBI-ProteinID: ACT04326
Position
complement(6548649..6551006)
AA seq 785 aa
MFNPINIDQAVQKLNPPQRDAVQATDGPLLIMAGAGSGKTRVLTHRIAYLIEKKRVAPWS
ILAITFTNKAAREMQARVAALIGPTGQDIWVSTFHSMCVRILRRDIDRIGFTSNFSILDS
ADQLSVIRNCMKELNIDVKKFEPKAVQAEISGAKNELITPERYEQKTGDYFTDIVAKVFK
MYQKRLKSNNSLDFDDLIMTTIQLFKEMPEVLEFYQNKFRYIHVDEYQDTNRAQYMLCRM
LADKHHNICVVGDSDQSIYRWRGADITNILNFEDDYPEARTIMLEQNYRSSANILEAANA
VIKLNTGRKPKKLWTDQGEGDMITLYQADSEHDEGYFVTGTISKNVKSGRRYDDHAILYR
TNAQSRVIEEILIKSDIPYQIVGGIKFYDRKEIKDLLAYLRLISNPDDDISLQRIINVPK
RGIGDTTVAKLAEEAVRQGTSIFSVLGNLQGIDLNARAQGLLHEFRDMIDNLTQMVDYLS
VTELTEKVLEMSQYRIELQREKTLESTARLENIDEFLSVTMDFEKRNEDKTLVAFLTDLA
LIADIDSMDKDDDGKPADNNSVVLMTMHSAKGLEFPVVFIIGMEESIFPHSRALNDNEEL
EEERRLAYVGITRAEKQLYLTCARSRTLFGRISANLPSRFLQEVPDNVKTLASPGGTIGR
SGSFAGGASRASYGSSSGSSFGGGRAPSFGASGAGARTAGPSGAGVRVSTPLDAAAKAAT
NAGAAAGNAADRNFVAGDKVAHGKWGEGVIVSVKGTGNDMELQIAFPAPVGVKRLLAGFA
PITKV
NT seq 2358 nt   +upstreamnt  +downstreamnt
atgtttaatccgataaatattgatcaagccgtacagaagctgaaccctccgcagagggat
gccgttcaggcgacggatggaccattgcttatcatggcgggagcgggatccggcaagacc
cgcgtgcttactcaccgtatcgcctatttaatcgagaagaagcgggttgcgccttggagt
attctagccattacctttaccaacaaagcggccagggagatgcaagcgagggtggcggcg
ctgatcggccctaccggtcaggatatttgggtctctactttccactccatgtgcgttcgg
attcttcgcagagatatcgatcgtatcggctttacttctaatttctcgattctggattca
gcagaccagctgtcggttatccgcaattgcatgaaagagcttaatatcgacgtgaaaaag
tttgagcctaaagctgttcaggctgaaatcagcggcgcgaaaaacgagctgattacgccg
gagcgttacgagcagaagacaggcgactattttaccgatattgtggcgaaagtatttaag
atgtaccagaagcggctgaaaagcaacaactcgctggactttgacgatctcatcatgacg
acgattcaactgttcaaggaaatgccggaagtgctggagttctaccagaacaaattccgt
tatatccatgtggatgagtatcaggatacgaaccgtgcgcaatacatgctttgccgtatg
ctggctgacaagcatcataacatttgcgttgtcggcgacagcgaccagtcgatctaccgc
tggcgcggagcggacattacgaacatcctgaactttgaggatgactatccggaagcccgt
accattatgctcgagcagaactatcgttcttcggcaaacattctggaagcggcaaatgcc
gtcatcaagctgaacacgggccgcaagccgaagaagctgtggaccgatcagggggaaggc
gacatgattaccttgtaccaggccgactccgagcatgatgaagggtatttcgtaaccggc
acgatcagcaaaaacgtgaaaagcggccgcaggtacgatgaccatgcgattctgtaccgc
accaacgcccagtcccgggtaatcgaggaaattctgatcaagtcggacattccttatcag
attgtcggcggcatcaagttctatgaccgcaaagagattaaggatttgctcgcatatcta
agactgatctcgaatcctgacgacgatatcagcttgcagcggattattaacgttccgaag
cgggggattggcgatacaacggtagcgaagctggcggaagaagcggttcgtcaaggcacg
tctatctttagcgtgcttggcaatttgcaagggatagatctaaacgcccgtgcccagggt
ctgctgcacgagttccgggatatgatcgataatttaacgcaaatggtcgactatctgtcc
gtaaccgagctgacggagaaggttttggaaatgtcgcaataccgcattgagctgcagcgc
gagaagacgcttgaatcgactgcccgcctcgaaaatatcgacgagttcctgtccgttacg
atggacttcgagaagcgcaatgaagacaagacgttagtcgctttcctgacggatcttgcc
cttatcgcggatattgattccatggacaaagatgatgacgggaagccggcggacaataat
tccgttgttctcatgacgatgcatagcgccaaaggcttggagttcccggttgtctttatt
atcgggatggaggagagcatcttcccgcatagccgagcattgaatgacaacgaagagctt
gaggaagagcgccgccttgcttacgtaggcataacgcgcgcggagaagcagctttacctg
acctgcgcgcgcagccggactcttttcggccgcatcagtgccaacctgccttcgcgtttc
ctgcaggaagtgccggacaacgtgaagacattggcttcgccgggcgggacgattggccgc
tccggcagctttgccggcggagcaagccgcgcaagctatggaagcagcagcggcagcagc
tttggcggagggcgcgcgccgtccttcggcgcgtctggcgccggagcccgcacggcggga
ccatcgggtgcgggagtgcgcgtgagcacgccgcttgacgcagcagcgaaagcggcgact
aacgccggagccgccgcggggaatgccgcggaccggaacttcgttgccggcgacaaggtt
gcgcacggcaaatggggcgaaggcgtcatcgtttccgtcaaaggaacgggcaacgatatg
gagctgcaaatcgctttccctgcgccggttggcgtcaaacggcttttggccggatttgca
ccaataacaaaagtctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (40)   

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