KEGG   Parus major (Great Tit): 107216343
Entry
107216343         CDS       T04864                                 
Name
(RefSeq) general transcription factor IIH subunit 2
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
pmaj  Parus major (Great Tit)
Pathway
pmaj03022  Basal transcription factors
pmaj03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pmaj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107216343
  09124 Replication and repair
   03420 Nucleotide excision repair
    107216343
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmaj03021]
    107216343
   03400 DNA repair and recombination proteins [BR:pmaj03400]
    107216343
Transcription machinery [BR:pmaj03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     107216343
DNA repair and recombination proteins [BR:pmaj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     107216343
SSDB
Motif
Pfam: Ssl1 VWA_2 C1_4 VWA IBR VWA_3 HscB_4_cys
Other DBs
NCBI-GeneID: 107216343
NCBI-ProteinID: XP_015508833
Ensembl: ENSPMJG00000003821
Position
Z:45907328..45921415
AA seq 395 aa
MDDEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRLYEHHGQVRLGMMRH
LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGLIVTKSKRAEKMTEL
SGNSKKHVTALKKAVDMNCSGEPSLYNSLNLAMQTLKHMPGHTSREVLVVLSSLTTCDPA
NIYDLIKCLKAVKIRVSVIGLSAEVRVCTVLARETGGTYHVILDEGHYKELLMHHVSPPP
ASSTSECSLIRMGFPQHTIASLSDQDAKPSFSMAQLENNSDPGLTLGGYFCPQCRAKYCE
LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEVPLEEYKGERYCQGCQGEIKDQNVYIC
KVCQNAFCVECDMFVHDSLHCCPGCIHEHPAPVSV
NT seq 1188 nt   +upstreamnt  +downstreamnt
atggatgatgaacccgagcggaccaagcgctgggaaggaggctacgaaagaacatgggaa
attcttaaggaagacgaatccgggtcgttgaaagcaaccatcgaggacattctcttcaaa
gcaaagaggaaaagactctatgaacaccatggacaagtccggcttggaatgatgcgtcac
ctttacgtggttgttgatggatcaagaacaatggaggaccaagacttaaaaccgaacaga
cttacttgcactctgaagttactggaatattttgttgaggagtactttgaccagaatcct
attagtcagattggattaattgtaaccaagagtaaaagagcggaaaaaatgacagaactc
tcaggaaactcaaaaaagcatgtaactgctctgaagaaagcagtggatatgaactgcagt
ggagagccttctctatataattccctaaatttggccatgcagactttaaagcacatgcca
ggacatacaagccgagaggttttggtagtcctcagcagtctgacgacatgtgatcctgcc
aacatctatgatctaattaagtgtttaaaagcagtaaagatcagagtgtctgtcatcggc
ttaagtgctgaagttcgagtttgtacagtacttgcccgagaaactggtggaacttaccac
gttattttagatgaaggtcattataaggaactgctgatgcaccatgttagtcctccacct
gccagttcaacttctgagtgctcccttattcgaatgggttttcctcagcatactattgct
tctctgtctgatcaagatgcaaagccctcctttagcatggcgcaactggaaaataacagt
gacccaggtcttacactgggtggatatttttgtcctcagtgcagagccaaatactgtgag
cttcctgtggaatgcaaaatctgtggtcttacattagtgtctgcacctcacctggctcgg
tcttaccatcacttgtttcctttagatgcctttcaggaagttccactggaagaatacaag
ggggaacggtattgtcaaggctgccagggagaaataaaagatcaaaatgtgtacatatgc
aaagtgtgtcagaatgcattttgtgtggaatgtgatatgtttgttcatgattcactgcac
tgctgtcctggctgtattcatgagcaccctgctcctgtatctgtatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

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