KEGG   Populus trichocarpa (black cottonwood): 18098912
Entry
18098912          CDS       T01077                                 
Name
(RefSeq) probable RNA helicase SDE3
  KO
K18422  helicase MOV-10 [EC:5.6.2.5]
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    18098912
   03036 Chromosome and associated proteins [BR:pop03036]
    18098912
Enzymes [BR:pop01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.5  RNA 5'-3' helicase
     18098912
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     18098912
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Gene silencing
   microRNA pathway
    Other miRNA pathway proteins
     18098912
SSDB
Motif
Pfam: AAA_12 AAA_11 MOV-10_beta-barrel AAA_30 ResIII AAA_19 SLFN-g3_helicase UvrD-helicase ATPase_2 AAA_22 Helicase_RecD PhoH AAA_16 Mg_chelatase AAA DEAD AAA_2 DAP3 AAA_24
Other DBs
NCBI-GeneID: 18098912
NCBI-ProteinID: XP_006382735
Position
5:2994165..3000212
AA seq 882 aa
METIRKDNWDDEYSIIRDKGEIGFIDFEDDKSVCNYDPATEGPIVISIPFPFVRGKPQTI
LVGEISKCAITIANTTSDPMELWGVRIFCSNPTDSFTLSLKEPPSANSNAEKLYGFLEGY
SLEDRVLQPHDTLTVWLSCKPKEMGLHTSVVYFDAGDDRIERVVFLLAEDNVSRSLAPNR
PFSKTPRRKQFVVDEHVVSPRPARATTHGFKYKLPQFPIPSNLIELLQNKQVPDVIMEDL
SMGTYAAFFSILVVMEELHLEEEMRCHNMECVNMRRKGSQFLALEVPGLAERRPSLVNGD
HVFVKLENAPDSNAYQGCIYRVEADEVLLKFSNNLLTHHRNGNLYNIRFTYNRVNMRRLY
QAVQAAEGLEHDLLFPSESTKRRLIKTPGFVPFNNSLNQEQIRSVEMILGCEGAPPYVIY
GPPGTGKTMTLVEAMLQIYATRKNDRILVCAASNSAADHVLEKLISNDDAKVKENQIFRL
NASSRSYEDVHPDHIRFCYFDESIFKCPPLRALVQYRIIISTYMSSSLLYAEGVSSGHFS
HIFLDESGQASEPESMVPIANFCSRETVIVLAGDPQQLGPVIYSKDAKAFGLGKSYLERL
FECEPYRNGDEGFVIKLVRNYRCHAAILDLPSKLFYKGELLACKEDTSSSISSIVDFLPN
KEFPVLFFGIQGFDERERNNPSWFNRIEASKVVEVINKLRASGDLDEADIGVITPYRQQV
LKIKKVLENWELSDVKVGSVEQFQGQEREVIIVSTVRSTIKHNDFDRTYRLGFLSNPKRF
NVAITRARSLLIIVGNPHIVSQDPCWEKLLWFCADNNSYKGCPLPERQSSACEEPIPKRN
SISELENSCHSRVREWFQSLDEEVPQITQIVSDAAEGSGCRK
NT seq 2649 nt   +upstreamnt  +downstreamnt
atggagacaatcagaaaggataattgggatgacgaatactccatcatcagggacaagggt
gagattgggttcattgattttgaggatgacaaatctgtctgcaactatgatcctgccact
gaaggaccaatcgttatatctatcccatttccctttgtgcgagggaagccccagaccatt
cttgtaggtgaaatttcaaaatgtgcgattacaatagcaaacaccacaagtgatcccatg
gagctttggggagttaggatattctgctcaaatcctacagactcgtttactttgtctttg
aaagaacctccatctgcaaactcgaatgcagaaaaattatatggtttcttggagggatat
tccctcgaggacagagtacttcagccgcatgatacacttaccgtttggttatcttgcaaa
ccaaaggaaatggggttgcacacatctgtggtatattttgatgcaggtgatgataggatt
gaacgcgttgtttttcttttggctgaagacaatgtctcccgttctctggctcccaacaga
ccattttcaaaaacaccaagaagaaaacaatttgtagttgatgagcacgtggtttccccg
cgtcctgccagggcaacaactcatggatttaagtataagcttcctcaatttccaataccc
agtaatctcatagagttattgcagaataagcaagtccctgatgttatcatggaagatttg
agtatggggacctatgctgcattcttcagtatattggtagtaatggaagagctacatcta
gaggaagaaatgaggtgccataacatggagtgtgttaacatgagaaggaaggggtctcaa
tttttggctctcgaggtccctgggctggctgaacgaaggccttcacttgtgaatggtgat
catgtttttgtgaagcttgaaaatgcacctgacagcaatgcatatcagggatgcatttac
cgagttgaggctgatgaagtgcttttgaaattttccaacaatcttcttacccatcaccgg
aatggaaacttatataatattcgatttacatataatagggtgaatatgaggaggttgtat
caagctgtgcaagcagcagagggcttagagcatgatcttctatttccatctgaatcaacc
aaaaggagactgatcaagacacctgggttcgtgccttttaataatagtctcaatcaggag
cagatacgttctgttgagatgatccttggctgtgaaggtgctcctccctatgtcatttat
gggcctccaggtactggtaaaacaatgaccttggtggaagcaatgttgcaaatatatgca
acaagaaagaatgatcgaattcttgtgtgtgctgcttcgaacagtgcagcagatcacgta
ttagaaaaactcattagcaatgatgatgctaaagtcaaagagaatcagatctttaggcta
aacgcaagtagccgttcttatgaagacgttcaccctgatcatatccgcttttgctatttt
gacgaatccattttcaaatgtcctcctctcagggccttggtacaatacaggatcattatt
tctacgtatatgagttcatccctactgtacgcagaaggtgtcagcagtggccatttctct
catatcttcttagatgaatctggccaggcttcagaaccagaaagcatggttcctatagct
aacttttgcagcagggaaactgtcattgttctagcaggtgacccacagcaactaggtcct
gtcatatattccaaagatgctaaggcttttgggttgggaaaatcttatcttgaaaggctg
tttgaatgtgaaccttacagaaatggtgatgaaggttttgtaataaaattagtgaggaat
tatcgatgtcatgcagcaattctagacctgccatcaaaacttttctataaaggggagttg
cttgcatgtaaagaagatacctcttcctccattagttctattgtggattttcttcctaat
aaagaatttcctgttttattctttggaattcaaggcttcgacgagagagaaagaaacaat
ccttcatggtttaacagaattgaggccagcaaggttgttgaagttatcaacaagctcaga
gcaagtggagatctagatgaggcagatataggagtaataacaccttatcggcagcaggtc
ctgaagatcaaaaaggtacttgaaaattgggaattgtcggatgttaaggttgggagtgtt
gaacagtttcagggacaggagagagaggtcattatcgtatctacagtaaggtcaactata
aagcacaatgactttgacagaacttaccgtctggggtttcttagtaacccaaagagattt
aatgttgcaattacccgagccagatccttgcttatcattgttgggaatccacacatagtc
agccaggatccttgctgggaaaagcttttgtggttttgtgccgacaataactcctacaaa
ggctgccctttacctgaaaggcaatcctctgcatgtgaagagcctatcccgaaaagaaat
tcaattagtgaattagagaactcatgccattcaagagttagggaatggtttcaatcactt
gatgaagaggttccacagattacacagattgtctccgacgcagctgaggggtctggctgc
cggaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (19)   
   Pfam (19)   
All databases (31)   

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