KEGG   Populus trichocarpa (black cottonwood): 18100225
Entry
18100225          CDS       T01077                                 
Name
(RefSeq) elongation factor 1-alpha
  KO
K03231  elongation factor 1-alpha
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    18100225
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    18100225
   03016 Transfer RNA biogenesis [BR:pop03016]
    18100225
   03012 Translation factors [BR:pop03012]
    18100225
   04131 Membrane trafficking [BR:pop04131]
    18100225
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pop04147]
    18100225
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Trans-acting binding proteins
     18100225
Transfer RNA biogenesis [BR:pop03016]
 Eukaryotic type
  tRNA transport factors
   tRNA export factors
    18100225
Translation factors [BR:pop03012]
 Eukaryotic type
  Elongation factors
   18100225
Membrane trafficking [BR:pop04131]
 Autophagy
  Chaperone mediated autophagy (CMA)
   Other CMA associated proteins
    18100225
Exosome [BR:pop04147]
 Exosomal proteins
  Proteins found in most exosomes
   18100225
SSDB
Motif
Pfam: GTP_EFTU GTP_EFTU_D3 GTP_EFTU_D2 MMR_HSR1 GTP_EFTU_D4 AAA_22 FlpD Gtr1_RagA
Other DBs
NCBI-GeneID: 18100225
NCBI-ProteinID: XP_006381487
UniProt: A9PH67
Position
6:10678414..10681185
AA seq 447 aa
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
DKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRFDEIVKEVSSYLKK
VGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDQISEPKRPTDKPLRLPLQD
VYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNV
KNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTCHIAVKF
AEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQT
VAVGVIKSVEKKDPSGAKVTKSAVKKK
NT seq 1344 nt   +upstreamnt  +downstreamnt
atgggcaaggagaaggttcacattaacattgtggttattggtcatgttgactctggcaag
tcaaccactactggtcatttgatctacaagcttggaggtattgacaagcgtgtgattgag
aggtttgagaaggaagctgctgagatgaacaaaaggtcattcaagtatgcctgggttttg
gacaagcttaaggctgagcgtgagcgtggtatcacaattgacattgctctctggaagttt
gagacaactaggtactactgcactgtcattgatgcccctggtcatcgtgactttatcaag
aatatgatcactggtacctcacaggctgactgtgctgtcctaattattgattccaccact
ggtggttttgaagctggtatctccaaggatggccagacccgtgaacatgccttgcttgcc
ttcacccttggtgtgaagcagatgatttgctgttgcaacaagatggatgccaccaccccc
aagtactccaagtctcggttcgatgaaatcgtgaaggaagtttcttcctacctgaagaag
gttggttacaaccctgacaagatcccatttgtccctatatctggttttgagggtgataac
atgatcgagaggtccaccaaccttgactggtacaagggccccaccctccttgatgctctt
gaccagatcagtgagcccaagagacccacagacaagcctctccgtcttccacttcaggat
gtctacaagattggtggtattggaactgtacctgtgggacgtgttgagactggtgtcctg
aagcctggtatggtcgtgaccttcggccccactggactgaccactgaagttaaatctgtt
gagatgcaccatgaagctcttcaggaggcccttccaggtgacaatgttggtttcaatgtt
aagaatgttgctgtcaaggatctcaaacgtggttttgttgcttccaactctaaggatgat
cctgccaaggaggctgccaacttcacctctcaggtcatcatcatgaaccaccctggtcaa
attgggaatggatatgcccctgtccttgactgtcacacctgccacattgctgtcaagttt
gctgagattttgaccaagattgacaggcgatctggcaaagagctcgagaaggagcccaag
ttcttgaagaatggtgatgctgggtttgtgaagatgattcccaccaagcctatggttgtt
gagaccttttctgcctatcctcctcttggtcgttttgcagtgagggacatgcgtcagacc
gtggcggttggtgtcattaagagtgttgagaagaaggatccatctggtgccaaggtcacc
aagtctgcagtaaagaaaaagtga

  All links  
Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (25)   

Download RDF
DBGET integrated database retrieval system