KEGG   Populus trichocarpa (black cottonwood): 18109637
Entry
18109637          CDS       T01077                                 
Name
(RefSeq) protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03250  Viral life cycle - HIV-1
pop04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    18109637
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    18109637
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pop04131]
    18109637
   03400 DNA repair and recombination proteins [BR:pop03400]
    18109637
Membrane trafficking [BR:pop04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    18109637
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    18109637
SSDB
Motif
Pfam: AAA MIT Vps4_C AAA_lid_3 AAA_5 RuvB_N AAA_16 AAA_14 AAA_22 TIP49 AAA_33 AAA_2 DUF815 AAA_17 RNA_helicase IstB_IS21 AAA_18 NACHT AAA_24 nSTAND3 Parvo_NS1 AAA_25 AAA_7 Mg_chelatase Torsin PhoH AAA_28 ResIII bpMoxR AAA_30
Other DBs
NCBI-GeneID: 18109637
NCBI-ProteinID: XP_024463657
Position
8:complement(1100064..1126812)
AA seq 434 aa
MYCNFMEHGIEYAKQAVKEDDAGNYRKAFQLYMNALEYFQAQLKYEKNPQIEKTIRQKCM
GYLRRAEEIRSVLDNGRSMPASNGDASVAARPKTSPKPKDGGRKGKEDPELAKLKEGLDS
VIIREKPNVKWSDVAGLENAKLALQEAVILPVKFPQFFTGKRKPWRAFLLYGPPGTGKSY
LAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARDNAPSIIFIDEIDSLCGQR
GECNESEASRRIKTELLVQMQGIGNDDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPD
LKARQHMFKVHLGDTPHDLTERDFEKLARKTEGFSGSDISVCVKDVLFEPVRKTRDAEYF
IKSSDGMWVPCELQRVAVKTTLQELDAQGLASKVLPPHITRADFNKVLARQKPTVSKADL
EVHERFTKEFGEEG
NT seq 1305 nt   +upstreamnt  +downstreamnt
atgtattgcaattttatggagcatggtatagagtacgcgaaacaggcagtcaaggaggat
gatgctggaaactataggaaagctttccagctttatatgaatgcattagagtattttcaa
gcacaactgaagtatgagaagaatccacagattgagaaaacaattaggcaaaaatgtatg
gggtatctgagaagggcggaggagatccgatctgttcttgataatggtaggagtatgcca
gcctcaaatggtgatgcatcggttgctgcacggcccaagactagtccaaaaccaaaggat
ggaggtaggaagggcaaggaggatccagagctagcgaagcttaaggaagggcttgattct
gttatcatcagggagaagccaaatgtgaagtggagtgatgtggcaggtcttgagaatgcc
aaactggcattgcaggaagctgttatattgcctgttaagttcccacagtttttcactggg
aagagaaaaccatggagggcatttttgttatatggtccacctggtacagggaagtcatac
ttggcaaaggctgttgcaacagaagctgattcaactttcttcagtgtttcttcctcagac
ctggtttccaaatggatgggtgaaagtgagaagctagtttcaaatcttttccaaatggct
cgtgataatgcaccttccatcattttcattgacgaaatagattcactttgtggccaacgg
ggtgaatgtaacgagagtgaagcatctcgtcgcatcaaaacagaacttcttgtgcagatg
cagggtatagggaatgatgatcagaaggttcttgttcttgcagccacaaatactccctat
gcactggatcaggctatccggcggcgttttgacaagagaatatacattcctctcccagat
ttgaaggcaaggcaacacatgtttaaggtgcatcttggagatactcctcatgatttaact
gaaagagattttgaaaagttggctcgaaaaacagaaggtttttcaggttcagatatttct
gtttgtgttaaagatgtgctctttgaacctgttcgtaaaacccgggatgcggaatatttc
attaaatcctctgatggcatgtgggttccttgtgaactacaacgagtagctgtcaagact
acactacaagaacttgatgcacaaggacttgcttcaaaggtccttccaccacacatcaca
agagcagatttcaacaaagtgcttgcacggcagaagccaacagtgagtaaagctgatctt
gaggtgcatgagagattcacaaaggagtttggagaagagggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (8)   
   RefSeq(pep) (8)   
DNA sequence (8)   
   RefSeq(nuc) (8)   
Protein domain (30)   
   Pfam (30)   
All databases (56)   

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