KEGG   Populus trichocarpa (black cottonwood): 7455196
Entry
7455196           CDS       T01077                                 
Name
(RefSeq) polyadenylate-binding protein 2 isoform X1
  KO
K14396  polyadenylate-binding protein 2
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    7455196
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7455196
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     7455196
SSDB
Motif
Pfam: RRM_1 HDV_ag RRM_7 CALCOCO1 SDA1_dom DUF724 Lge1 DUF2981 CPSF100_C
Other DBs
NCBI-GeneID: 7455196
NCBI-ProteinID: XP_002306300
UniProt: B9H4R7
Position
5:4877943..4883191
AA seq 218 aa
MEEEEHEVYGGEIPDVEGDMDPHNADVDMSAADDDAVKELDEMKKRLKEMEEEAAALREM
QAKVEKEMGAVQDPATAAANQANREEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVT
ILTDKFGQPKGFAYVEFLEVEAVQEALALNESELHGRQLKVSPKRTNVPGMKQYRPRRIN
PYMGYRFRRPYAPPYFYSPYGYGKVPRFRRSMRYMPYY
NT seq 657 nt   +upstreamnt  +downstreamnt
atggaggaagaagaacatgaggtttacggtggagagattcctgatgtggaaggggatatg
gatcctcacaacgccgacgttgacatgtccgccgccgatgacgatgccgtcaaggagttg
gatgagatgaagaagagattgaaggagatggaagaggaagcggctgctcttcgtgagatg
caagctaaagttgagaaggaaatgggcgctgttcaagatccagctactgcagctgctaat
caagcaaacagggaggaagcagattctcgttctgtgtttgttggcaatgttgattatgca
tgcacacctgaagaagtgcagcagcattttcagtcctgtggtacagtaaacagggttact
attctgacagataagtttggccagccaaagggtttcgcttatgtggaattccttgaagta
gaagctgttcaagaggctctagctctcaatgaatctgaactacatggccgtcaattgaag
gtttcacccaaaaggaccaacgttcctggaatgaagcagtatcgacctagacgaatcaat
ccctacatgggttaccggttcaggaggccatatgcgcccccttatttctactctccttat
ggatatgggaaggtgcctagattcagaaggtcaatgcgatacatgccttactactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (9)   
   Pfam (9)   
All databases (24)   

Download RDF
DBGET integrated database retrieval system