KEGG   Physcomitrium patens (spreading earthmoss): 112289227
Entry
112289227         CDS       T01041                                 
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit D-like
  KO
K07466  replication factor A1
Organism
ppp  Physcomitrium patens (spreading earthmoss)
Pathway
ppp03030  DNA replication
ppp03420  Nucleotide excision repair
ppp03430  Mismatch repair
ppp03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    112289227
   03420 Nucleotide excision repair
    112289227
   03430 Mismatch repair
    112289227
   03440 Homologous recombination
    112289227
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ppp03000]
    112289227
   03032 DNA replication proteins [BR:ppp03032]
    112289227
   03400 DNA repair and recombination proteins [BR:ppp03400]
    112289227
Transcription factors [BR:ppp03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    112289227
DNA replication proteins [BR:ppp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    112289227
DNA repair and recombination proteins [BR:ppp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     112289227
   MMR (mismatch excision repair)
     112289227
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     112289227
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 tRNA_anti-codon DUF223 CDC24_OB3 zf-RRPl_C4 RMI1_C zinc-ribbons_6
Other DBs
NCBI-GeneID: 112289227
NCBI-ProteinID: XP_024390039
Position
1:15769467..15772962
AA seq 479 aa
MTSVSLKSVETMSTVKILEGQGANMTPTKMGLSKRVYPILSLNPYQGNWTIKVRVTSKSP
LRTFKNARGDGNVFNVELTDEDGTQIQATMFKEAADKFYDVLQLDKVYFISKGSLRMANK
QYATVKNDYEMTLNSNSEIVEADIESSTFKLPSATYNFTKISDLGRHISSKRFVDVLGVV
QSVGPLTTVNRKSNNDEIPKRDIVLLDQSRQTVVLTLWNNMAVKEGASLADLIAESPILM
AKGLRLSDFQGVSLSSTMNTMVLINPVIPDANELRTWYEEDGRTASLTPAGASLPGGTNQ
NRSSFTDRAVLSDIIQPNVGEGKPMYFNVRAYISFIKPDQAMWYLACQTCNRKVVEQSSS
SYWCEGCQNHYDKCSRRYIMQAKLSDSSGEAWVSAFNEQAESLLGVSADNLSEMRNQAGD
DNQYQNAVRKAMWQPCVYRISAAQTEYMSEKRQRLTVRTVVPVDWVAESKHLLAKITKG
NT seq 1440 nt   +upstreamnt  +downstreamnt
atgacgtccgtgtcgctcaaaagcgttgagacgatgtcgacagtgaaaatcttggagggg
caaggtgccaacatgactccaaccaagatgggtctgtcgaagagagtgtaccctattctt
tcactcaacccgtaccaagggaattggacaattaaagtgagggtcacgagcaagagccct
ctcaggactttcaagaacgcacgtggagatgggaatgtcttcaacgttgagctcaccgat
gaagatggtacacaaattcaagccacaatgtttaaggaggctgctgacaaattctatgac
gttctgcaactggacaaggtatatttcatctccaaaggcagcttgcgtatggcgaataaa
caatacgctaccgtaaaaaacgactatgaaatgacgctcaacagcaattctgaaattgta
gaggcggatattgagagttctaccttcaaattgccttctgcaacatacaacttcactaag
atttctgaccttggtcggcacataagttccaagaggtttgtcgacgttttgggagtcgtc
cagagtgtggggcctttaacgacggtgaatcgtaaatccaacaacgatgaaattcctaag
cgagacatcgtgctcttggaccaaagtcgccaaacagtagttttgacgctttggaacaac
atggccgtgaaggaaggggcgtctttggcagacctgatcgctgaatcccctattctcatg
gctaaagggcttcgtctgagcgacttccaaggtgtatctctttcatccaccatgaatacc
atggttctcatcaatccagtcataccagatgcaaacgaactccgcacttggtatgaggag
gatggacggactgcttccttgactcctgctggggccagcctcccagggggtacgaaccag
aatcggtcctcatttacagaccgagccgtgctttccgatatcattcaacctaatgttggt
gaaggcaagccgatgtacttcaatgtgagagcgtacatcagcttcatcaagccagaccaa
gctatgtggtacttagcttgccaaacttgtaatcgcaaggtggtggagcagagcagttca
agttactggtgtgagggatgtcagaatcattatgataaatgcagccgcaggtatatcatg
caagccaagctatcggactcttcaggagaggcctgggtttctgcattcaatgagcaggca
gaatcactcctaggtgttagtgcagacaatctctccgagatgaggaatcaggccggcgat
gataaccaatatcagaatgccgtaaggaaggcaatgtggcaaccgtgtgtataccgcatc
agtgctgcccagacggagtacatgagcgaaaagcgacagcgactcactgtacgcacagta
gtgccagtcgactgggttgctgaaagcaagcaccttctggcgaaaataacgaaaggttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (8)   
   Pfam (8)   
All databases (29)   

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