KEGG   Pseudomonas putida NBRC 14164: PP4_50330
Entry
PP4_50330         CDS       T02707                                 
Symbol
ligB
Name
(GenBank) DNA ligase B
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ppun  Pseudomonas putida NBRC 14164
Pathway
ppun03030  DNA replication
ppun03410  Base excision repair
ppun03420  Nucleotide excision repair
ppun03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ppun00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PP4_50330 (ligB)
   03410 Base excision repair
    PP4_50330 (ligB)
   03420 Nucleotide excision repair
    PP4_50330 (ligB)
   03430 Mismatch repair
    PP4_50330 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppun03032]
    PP4_50330 (ligB)
   03400 DNA repair and recombination proteins [BR:ppun03400]
    PP4_50330 (ligB)
Enzymes [BR:ppun01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     PP4_50330 (ligB)
DNA replication proteins [BR:ppun03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     PP4_50330 (ligB)
DNA repair and recombination proteins [BR:ppun03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     PP4_50330 (ligB)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PP4_50330 (ligB)
   MMR (mismatch excision repair)
    DNA ligase
     PP4_50330 (ligB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      PP4_50330 (ligB)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_5 DUF3701 HHH_2 RNA_ligase ORF_2_N Transposase_20
Other DBs
NCBI-ProteinID: BAN56886
Position
5698354..5700051
AA seq 565 aa
MPYLLLVLLFALHTPLASATSCPDWTPQQAEAEVAQLRATLARWDEHYHRQGAALVADEL
YDQSRERLNHLQQCFAVGSSPSPLASARGAVPHPVPHTGVDKLADRQAVARWMAGKTGVW
VQPKVDGVAVSLTYQQGRLVQLTSRGDGVHGHDWSRHIPQLGAITRELPMPVDLHLQGEL
YLRLNEHVQAKAGSANARGTVAGLLARKQLTAEQGDTIGLFVWSWPQGPGQQAERLAQLA
QLGFPDSLRYSIAIDTAEDAAHWREHWYRSPLPFATDGVILRQGSRPPAQRWQAKAPYWI
AAWKYPYVQALAEVRDVRFRVGRTGRVTPIVHMQPVTLDDRRISQVSLGSLGRWQALDIR
PGDQVAISLAGLTIPRLDHVVHRAVERQPLAVPAPDQHHAHSCWQASEGCEEQFIARLTW
LGGKQGLALPRTGPGTWRRLVEAGLVTSMTDWLHLDAERLQQVPGISSLTAAQLLSSFDQ
ARSRPFDQWLRGIGAPVSKHLRLTGDWAELASRSTGQWQAVPGIGAKRSRQLVDFFAAPE
VQAVAARLAKTGIEGFPASPQRIEQ
NT seq 1698 nt   +upstreamnt  +downstreamnt
atgccttacctgctgcttgtcctgctgtttgcgctacacaccccactggccagcgccacc
tcatgccccgactggaccccgcaacaggccgaggcggaagttgcgcaactgcgcgccacg
cttgcccgatgggacgagcactaccatcgccagggtgctgccctggtcgccgatgaactg
tacgaccaaagccgcgagcggctgaatcacctgcagcagtgcttcgcggttggcagcagc
ccctcccccttggccagcgctcgcggcgcggtcccccaccccgtgccgcataccggcgtc
gacaagctggcagaccgccaggccgtggcgcgatggatggccggcaagaccggtgtgtgg
gtacagcccaaggtcgacggtgttgcagtttccctcacttaccagcagggccgattggta
cagctgaccagccggggtgacggtgtacacggccatgactggagccgacacattccacaa
ctcggcgcaatcacccgagagttgcccatgccggtagacctgcacttgcaaggtgagctg
tatctgcgcctgaacgaacacgtacaagccaaggcaggcagtgccaacgcccgcggcacc
gtggccgggctgctcgcacgcaagcaactgaccgccgagcaaggggacacgatcggcctg
tttgtgtggagctggccgcagggccccgggcaacaggcagaacgcctcgcacagctggca
caactggggttcccggacagcctgcgttacagcatcgccatcgacacggcggaggacgca
gcacactggcgtgagcactggtaccgctcccccctgccctttgccaccgacggtgtgatc
ctgcgccagggcagccggccgcccgcgcagcgctggcaagccaaggcgccgtactggatc
gcggcctggaaatacccctatgtgcaagccttggccgaggtgcgcgacgtgcgctttagg
gttggccgcaccggcagggtcacgcccattgtgcatatgcagccggtaaccctcgatgac
cggcgtatttcccaggtaagccttggctcgctggggcgctggcaagccttggatatccgc
cccggcgaccaggtggccatcagcctggccgggctgaccattccacgcctggaccacgtc
gtgcaccgcgctgtcgagcgccagccactggccgtgcctgcacccgaccagcatcatgcc
cacagctgctggcaggccagcgaaggctgtgaagagcaattcattgcccggcttacctgg
cttggcggaaaacaaggcctggccttgccgcgtaccgggcccggcacatggcgccggctg
gtcgaagcgggcctggtaacgtcgatgaccgactggctgcatctcgatgccgagcgcctg
cagcaggtacccggcattagcagcctgacggcggcacagctgctaagcagcttcgaccaa
gcgcgctcacgccctttcgatcagtggctgcgcggcattggcgcacccgtcagcaagcat
ctacgactgacaggcgactgggcagagctggcttcacgcagtaccgggcaatggcaagcc
gtgcccggcatcggcgcaaaacgctcgcgccaacttgtggatttcttcgcggctcctgag
gtgcaggccgttgctgcacggttggcgaaaaccggcatagaggggttccccgcgagccca
cagcgcattgagcaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (27)   

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