KEGG   Poecilia reticulata (guppy): 103475103
Entry
103475103         CDS       T05149                                 
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46 isoform X1
  KO
K12590  exosome complex component RRP46
Organism
pret  Poecilia reticulata (guppy)
Pathway
pret03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pret00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103475103 (exosc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pret03019]
    103475103 (exosc5)
Messenger RNA biogenesis [BR:pret03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     103475103 (exosc5)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 103475103
NCBI-ProteinID: XP_008424727
UniProt: A0A3P9PWF5
Position
LG13:30496938..30505548
AA seq 236 aa
MTSFSCDKHRLHREGGMMEVSPSSTVSLREFGCEQTLLSRPDGSASFVQGDTSVMAGVYG
PAEVKISKEIYDRATLEVLVHPKVGLPGVRERSQEQCVRETCEASLLLSLHPRSSLTLIL
QVLHDDGALLSCCLNAACMALMDAGLSMSCLFCGVTCAISADGEIITDPTAAQEKESRAL
MSFAIDGKERRVMMSSTKGSFSVHELQQCVAVSQKASEKIFQFYRDSVRRRYSKNL
NT seq 711 nt   +upstreamnt  +downstreamnt
atgacgtcatttagctgcgacaaacatcgtctccaccgtgaaggcggcatgatggaagtc
tctccttcttcaactgtttctctcagagagttcgggtgtgaacaaaccttactgtcccgt
cctgatggatcggcgtccttcgttcagggagacaccagtgtgatggcgggagtctacgga
cctgctgaggtcaaaatcagcaaggaaatctacgaccgggcaaccctggaggttctggtt
catcccaaagtggggctgccaggtgtgagggagcgatcacaggaacaatgtgtgcgggaa
acgtgtgaggcgtctctgcttttatctctccatcctcgctcgtcgctcacgctcatcctg
caggtgctgcacgacgacggcgccctcctgtcctgctgtctgaacgcagcctgcatggcc
ctgatggacgccggcttgtctatgagttgcctgttttgtggagtgacctgcgccatcagc
gcagacggtgaaatcatcacagacccgactgcagctcaggaaaaggaaagtcgagctttg
atgtccttcgccatcgacggcaaagagcgcagagtgatgatgtcatcaaccaaaggctcg
ttctcggttcatgagctgcagcagtgcgtagccgtcagtcaaaaagcgtcagagaagatc
ttccagttctacagggactccgtcagacgccgatactccaagaacctttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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