KEGG   Poecilia reticulata (guppy): 103480252
Entry
103480252         CDS       T05149                                 
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
pret  Poecilia reticulata (guppy)
Pathway
pret04510  Focal adhesion
pret04512  ECM-receptor interaction
pret04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pret00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    103480252 (col4a5)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    103480252 (col4a5)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    103480252 (col4a5)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pret04147]
    103480252 (col4a5)
   00536 Glycosaminoglycan binding proteins [BR:pret00536]
    103480252 (col4a5)
Exosome [BR:pret04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   103480252 (col4a5)
Glycosaminoglycan binding proteins [BR:pret00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   103480252 (col4a5)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 103480252
NCBI-ProteinID: XP_008433359
Position
LG18:complement(5822327..5880008)
AA seq 1688 aa
MTRGLRRLRQPAWVVIWLVLYATIQLSDSAACNGCGGSKCDCSGVKGEKGERGFPGLTGQ
PGVPGFPGPEGPIGTRGEKGSDGPSGPSGPKGIRGPSGLPGFPGTPGLPGLPGQDGPPGP
RGVPGCNGTKGEPGFPGSSGIPGRQGFPGPPGLPGEKGDRGDVFYTNNYGLKGAVGLPGL
PGSPGSPGPTGLPGPTGPPGIPGYEGIPGPPGPPGPKGNMGLNFEGPKGDKGDQGLPGPP
GPPGPGQGEQVRPPPTEIQRGDKGDPGPPGPPGDPGSTGPPGPSGGQKGEKGEPGEAGKR
GKQGKDGDPGAIGYPGLKGEPGSPGLPGRDGERGQKGDRGFPGPPGPVIRPTNGAAVGPK
GEPGFPGNPGAKGERGPQGFSGPPGTPGVPGIGGSGPPGPPGFPGDKGQKGDPGTPSNAL
PGPPGRPGNPGNPGPQGPPGPPGYSSPVDNCLPGEPGLPGIQGQKGFPGEQGQKGQKGET
CVNCIDGGNPIPGPPGPPGPPGFPGSPGPQGLKGEPGFQGITGLSGPPGVPGSVGAPGFP
GEKGEPGDTFGGGGVKGEKGDSGFPGPPGLPGLDGRPGRDGAPGTPGPKGAPGSLLLKGE
RGPPGDTGPPGIPGDRGPPGGPGYGVPGAPGEKGAQGNSGIPGIPGQPGVKGEPGPTVTE
KGQPGPKGIDGNPGSPGPPGPRGTDGQPGSPGFPGPKGEPGQPGVGLPGPAGVKGFPGIP
GQPGAPGKVGRPGIDGFPGPPGFPGPKGEAGFGLPGPPGQPGLAGAKGFPGQKGDPGFPG
NPGGPGRPGFDGGPGLKGEPGSPGQPGPRGPPGSATSGVQGPPGPPGPPGPMGPTGYPGG
SGEKGDPGPPGLDIPGSPGDRGNPGFPGPPGPIGIPGPPGGPGRDGAPGFPGPKGDMGSM
GPPGPSGGPGSPGGPGAPGLKGEPGFPGSNGIPGGPGSKGEKGDPGSPGLPGPIGPVDIR
GAKGDPGTPGSPGSPGPKGIAGLPGDPGLPGQDGRSGIPGPPGLKGEPGIPGSPGGPGFP
GPKGAMGDMGIPGPMGSKGTAGFQGRPGSPGQPGIPGLQGPKGDPGSAGVGPPGPQGQKG
DPGQPGFPGSPGGKGGPGTPGLPGLPGLPGAKGDVGLAGFQGPPGFPGPKGLDGGPGAPG
LSGAPGRPGESGRPGPPGQVGEKGQPGRDGIPGPAGVKGEPGIPGFGVPGPSGLPGSPGE
KGNPGLPGPTGGPGFPGPKGDTGFPGPPGSPGVSGPPGPPGLPFQGIKGNQGPPGPPGRA
GPAGPPGVPGPEGPRGLPGGGGVKGDKGNPGNPGLPGQPGQKGDPGFPGAPGPSGGPGGP
GPKGDIGFPGVSGFPGSKGEPGLPGPSGLPGDPGVDGAPGPPGDPGSSSPVDYVKGAPGP
PGPPGSPGATGPPGSPGAPGSSGLPGPSGDTGSPGPPGFNGPPGKKGDTGPAGQPGQKGN
TGPPGSDGPQGPPGFPGSGSAAHGFLLTRHSQSEITPECPSGTNFIYDGYSLLYVQGNER
AHGQDLGTAGSCLRRFSPMPFMFCNINNVCNFAARNDYSYWLSTLEPMPMSMEAVTGDNI
KPYISRCAVCEAPAMVIAVHSQTIQIPSCPANWRSLWIGFSFMMHTSAGAEGSGQALASP
GSCLEDFRSTPFIECHGRGSCNYFSNSYSFWLATVEKLDMFKKPQSETLKAGNLLTRVSR
CVVCMKTT
NT seq 5067 nt   +upstreamnt  +downstreamnt
atgactagaggcttgaggcgcctgcgacagcctgcctgggttgtgatttggctcgtactg
tacgccaccatacaactatccgactctgcggcttgcaatggatgtgggggctccaagtgt
gactgcagtggagtgaaaggagaaaagggggaaaggggtttcccaggtcttaccggacag
ccaggggtcccagggttccccggacctgagggaccaatcggaactagaggagagaaggga
agtgatggaccttcaggaccatctggtccaaaaggaataagaggaccttccggattgcct
ggatttccaggaacgccaggacttccaggtctgccaggacaggacggacccccgggccca
aggggagtgccgggttgtaacgggacaaagggtgaacctggttttccaggtagttcagga
atacctggacgacaaggatttccaggtccacctggtctcccaggagaaaagggagaccgt
ggagatgtgttttacaccaacaattatggactaaaaggagcagttggtttgcccggattg
ccaggatctccgggcagtcctggacccacaggtttaccaggcccgactggccctccagga
attccaggctacgagggtattccaggtcctccaggtcctcctggacctaagggaaacatg
gggttgaactttgaaggtcccaaaggagacaagggtgatcaaggcttgccgggacctcct
ggtcctccgggaccaggtcagggggaacaggtcagaccaccaccaacagagatccagaga
ggcgacaagggtgaccctggccctccaggtccaccaggtgacccaggcagcacaggtcca
cctggtccctctggtggccagaagggagagaaaggagaaccaggagaagcaggaaaacga
ggaaaacaaggcaaagacggagacccaggagctataggatacccaggactcaaaggagag
cctggaagcccaggtctcccaggccgagatggagagagaggacaaaaaggcgaccgagga
tttccgggacctccaggaccggtaattcggcctacgaatggagctgctgttggtccaaaa
ggtgaacccggttttcctggaaatcctggagccaaaggagaaagaggaccacaaggtttc
tcagggcctccgggaacaccaggagttccaggcataggtggcagcggtcctccgggtcct
ccaggtttccctggagacaaaggtcagaagggagaccccggcactccttcaaatgccttg
cccggtcccccaggacgtccgggaaatcccgggaatcctggtccacaagggccgcctgga
cctcctggctattcctcaccggtcgataactgccttcctggagagcctgggcttcctgga
atccagggtcaaaaaggtttccctggagagcaaggccagaaaggtcagaagggagaaacc
tgtgtcaactgcattgacggaggcaatcctataccggggcccccagggcctccaggtccg
cctggcttcccaggctctcctggcccgcaaggtctaaagggagaaccaggttttcaagga
ataacaggccttagtggaccccctggtgttcctggttctgtaggtgctccaggtttcccc
ggagagaaaggagagccaggagataccttcggaggtggtggtgtgaaaggagagaagggt
gacagtggtttccctggaccacccggtctgcctggcctggatggtcgacccggtcgtgat
ggagcgcctgggacgcctggccccaagggagctcccgggtctctgctcttaaaaggagaa
cgaggtccccctggtgacacaggtccgcctggcatcccaggagacagaggtccaccaggc
ggccctggctatggagtcccgggtgcaccaggggagaaaggtgctcaaggcaactcagga
atacctggcattcccggacaaccaggtgtaaaaggtgaaccaggtccgacggtcacagag
aagggtcagccaggacccaaaggaatagatggcaacccagggtcgcccggtccgccaggt
ccgcgaggtacggatggacagcctggttcaccaggttttcctggaccaaagggtgaaccg
ggacaaccgggcgtcggccttccaggtcctgcaggagttaagggattcccaggtattccg
ggccagccgggagcacctggaaaagtagggagaccgggaatagatggattccccgggcca
ccagggtttcctggaccaaagggtgaggcaggctttggacttcctggtcctcctggtcaa
cctggactagcgggagctaaaggattccctggacaaaagggagatcctggtttccctggc
aacccaggtggaccagggcgacctgggtttgatggcggaccaggacttaaaggggagccc
ggctcaccaggccaacctggacctcgtgggccccctggaagcgcaacaagtggtgtacag
ggtcctccaggccctcctggaccccctgggccaatgggaccaacaggatacccaggagga
agtggggagaaaggagacccaggtccaccaggcttagacatcccagggtcaccaggtgac
agagggaatcctggttttcctggcccccctggaccaataggaatcccaggacctcctgga
ggacctggaagggacggcgcacctggatttccaggtccaaaaggtgacatgggttcaatg
ggacctccaggaccatctggaggacctggctctccgggaggacctggtgcacctggtctt
aaaggtgaaccaggatttccaggcagtaacggcatcccaggtggacctggttctaaagga
gaaaagggagacccaggttccccgggactcccaggacccattgggccagtagatataaga
ggagcaaaaggagatcctggaactccaggatcaccaggctctccgggacccaaaggcatt
gcaggtctccctggtgaccctggattgcctggacaagatggacgctctggcattcctgga
ccgccagggcttaagggagaacctggtatcccagggagtcctggtggtcctggatttcca
ggtccaaaaggtgcaatgggagatatgggaattccaggacctatggggtcaaaaggcaca
gcaggttttcagggtaggccaggatccccaggtcagccaggaatacctggcctccaagga
ccaaaaggtgacccaggttctgctggtgttggaccacccggaccacagggacaaaaggga
gatccaggtcagcccggattcccaggaagtcctggaggtaaaggaggtccgggaacacct
ggtcttcctggtttaccagggctaccgggggccaaaggagatgtaggcctcgcaggattc
caaggtcctcctggtttccctggtccaaagggtcttgatggtgggcctggagcccctggt
ctctcaggagctccaggtagaccaggagagtctggtcgaccaggaccaccaggacaggtt
ggggagaagggtcagccgggaagagatgggatcccaggaccagccggtgtcaaaggagaa
ccaggaattcctggctttggcgttccaggtccttctgggcttccagggtcgccaggtgaa
aaaggaaacccaggccttcctggtcctactggaggcccaggatttcctggcccaaaaggg
gacaccggctttccaggtccaccaggttctccaggtgtcagtggtcctccaggtcctccg
ggactgccattccagggcattaaaggaaatcaaggaccccccggaccacctggaagagca
gggcccgcaggtcctccaggtgtgcctgggccagagggtccccgcggtctcccaggaggt
ggcggcgttaagggagacaaggggaatcccggaaatccgggtctgcccggccagcctggt
caaaaaggagatcctggttttccaggagcaccgggcccctctggtggtcctggtggccct
ggtccaaagggagatataggatttccaggcgtttccgggttcccaggatcaaagggtgag
ccgggacttcctggtcccagtggacttcctggagatcctggggtcgacggagcacctggc
cctcctggagatcctgggtcttcatcacctgttgattatgtgaaaggagcgccaggacct
ccgggtccaccaggaagcccaggtgctacaggcccacctggttcgcctggagcccctgga
tcctcaggtctaccaggcccctctggagataccggttcacctggtcccccaggcttcaac
ggcccacctggcaagaagggagacactggacccgcagggcaacctggccaaaagggcaac
actggcccacctgggtcagatggtccacagggtccgccgggttttccgggctcagggtca
gcagcccacggcttcctcctcacccgacacagccagagcgaaataacgccagagtgtcct
tccggaaccaacttcatctacgacggatattccctgttgtacgtgcaaggcaacgagagg
gctcacggacaggacctgggcaccgccggcagctgtctgcgccggttcagccccatgcct
ttcatgttctgcaacatcaacaacgtctgcaactttgctgcccgtaacgactactcctac
tggctgtcaactttggagcccatgcctatgtccatggaggctgtgactggagacaacatc
aagccgtacatcagcaggtgtgctgtgtgtgaagctccagccatggtgattgcggtccac
agccagaccatccagattccctcttgtcccgcaaactggagatccctgtggatcggattc
tccttcatgatgcacactagcgcaggtgccgagggctccggtcaggccctggcctctccc
ggctcctgcctggaggacttccgcagcacgcccttcatagagtgccacggcagagggtcg
tgtaactacttcagcaactcctacagcttctggctggctactgtggagaaacttgacatg
ttcaagaaaccccagtcagagactttaaaggcaggcaacctacttacacgtgttagccgc
tgtgtggtttgcatgaagacaacgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system