KEGG T03623: PSCI

Pseudomonas sp. StFLB209: PSCI_5040

Entry

PSCI_5040         CDS       T03623

Name

(GenBank) sigma-54-dependent transcriptional regulator

K11914

sigma-54 dependent transcriptional regulator

Organism

pses Pseudomonas sp. StFLB209

Brite

KEGG Orthology (KO) [BR:pses00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pses03000]
    PSCI_5040
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pses02044]
    PSCI_5040
Transcription factors [BR:pses03000]
Prokaryotic type
  Helix-turn-helix
   Other families
    PSCI_5040
Secretion system [BR:pses02044]
Type VI secretion system
  Imp/Vas secretion system related proteins
   PSCI_5040

SSDB

Motif

Pfam:

Sigma54_activat Sigma54_activ_2 HTH_8 GAF HTH_30 AAA_5 AAA_16 GAF_3 HTH_28 HTH_50 HTH_23 HTH_7 AAA_7

Other DBs

NCBI-ProteinID:

BAP45742

UniProt:

A0A077LNV0

Position

complement(5680134..5681648)

AA seq 504 aa
MPLLSFDEQTTELLRQCVTLASAGHETLLHDFVRILSDITGCELAQVYLLDSTGVRLHLD
AEHHVAASVADDAVVHGTAQPALDYRDCPLLHFTLRQGEPLYLNPIIAVLHDISFLPECR
WQTLLCVPLADVAGQVKGLMLCASSRQRPLHGAAGVLAQLGTLMLARKADHAALEPSGVA
GPTHSPVAPADGYGLIGDSLAISQTRQMIGKVLRSDCTVLLNGETGTGKEVVARAIHHYG
ERRAGAFVVQNCAACPEGLLESELFGYRKGAFTGALRDRPGLFDTACGGTLLLDEIGDMP
LSLQAKLLRVLQEGEIRPLGCNQPHRIDVRVIAATHRDLRALVKAGAFREDLYYRLAQFP
IELPALRHRQGDVATLARHFAALAVAKRQGTVRWSEAALDYLNGYGFPGNVRELKGLVER
AVLLSEGRQLRLEHFIGPPGVLPASGSGDLRQRLERVERALVIESLHNNGGNRTQTAREL
GMARRTLLYRLQRLNIRCELPADC

NT seq 1515 nt +upstreamnt +downstreamnt
atgccgcttctgagcttcgatgaacaaaccactgagctgttgcgccagtgcgtgaccctg
gccagcgccgggcatgagactctactgcacgactttgtgcgcattctcagtgacatcacc
ggctgcgaactggctcaggtctacctgctcgacagcacaggcgtgaggctgcatctggat
gcagaacatcacgttgccgcgtctgtggctgacgacgctgtggtgcacggcaccgcgcag
ccggcgctggactaccgcgactgcccgctgttgcatttcactttgcgtcagggtgagccg
ctgtacctgaacccgatcattgcggtattgcatgacatcagcttcctgccggagtgccgc
tggcagaccttgttgtgtgtgccgctggccgatgtcgccgggcaggtcaaagggctgatg
ctgtgcgccagtagccgccagcgaccactgcatggcgcggccggggtgctggcgcagttg
ggcacgctgatgcttgcccgcaaggccgaccacgcagcgcttgagccgtccggcgtggcg
gggccgactcactcgccggtggcgccggctgacggctatggcctgatcggcgatagcctg
gcgatcagccagacccggcagatgatcggcaaggttctgcgtagcgactgcaccgtatta
ctcaatggcgagactggcaccggcaaggaagtcgtggcgcgggcgatccatcattacgga
gagcgtcgggccggtgcgttcgtggtgcagaactgtgcggcctgcccggaaggtctgctg
gaaagcgagttgttcggctatcgcaaaggcgcgtttaccggtgcgttgcgcgaccgcccc
ggcctgttcgataccgcgtgcggcggtacgctgttgctcgatgagattggtgacatgcca
ttgagcttgcaggccaagttgctcagggtcttgcaggaaggcgagattcgcccgctgggt
tgtaaccagccgcaccggatcgacgtgcgggtgatcgctgcgacccatcgcgacctgcgg
gcgctggtcaaggccggagcctttcgtgaggacctgtattaccggcttgcacaatttcct
atcgagttgccggccctgcgtcatcgccagggtgatgtggcgaccctggctcgccatttt
gccgcgctggcggttgccaagcgccagggcacggtgcgctggtcagaagcggccctggat
tacctcaatggttacggctttcccggcaatgtccgcgagctcaaaggcctggtcgagcgc
gctgtactgctcagtgagggccgccagttgcgccttgagcatttcatcggcccgcccggc
gtcttgccggcgtcaggcagcggcgatcttcgccagcgtctggagcgggtcgagcgtgcc
ctggtgatcgaaagcctgcacaacaacggtggcaatcgcacccagacggcccgcgagctt
ggcatggcccggcgcacgctgctgtaccgcctgcaacgactcaacatccgctgcgaactt
cccgctgattgctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (21)   

Download RDF

DBGET integrated database retrieval system