KEGG   Papaver somniferum (opium poppy): 113349420
Entry
113349420         CDS       T05758                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10-like
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
psom  Papaver somniferum (opium poppy)
Pathway
psom03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:psom00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113349420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:psom03041]
    113349420
Enzymes [BR:psom01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     113349420
Spliceosome [BR:psom03041]
 Complex C
  Other components
   Step II factors
    113349420
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C AAA_22 HA2_N DEAD nSTAND3 FtsK_SpoIIIE AAA_19 T2SSE PhoH ATPase AAA_16 ABC_tran AAA_30 AAA_24
Other DBs
NCBI-GeneID: 113349420
NCBI-ProteinID: XP_026449179
Position
2:complement(149184797..149192141)
AA seq 711 aa
MATEVPKNSEGTPKWKNNHSHSNGNLPQNMRRQIISQQRKSLPIASVEKRLLEEVRKHDI
LIIVGETGSGKTTQLPQFLCNGGFCRDGKVIGITQPRRVAAVTVAKRVAEECDVELGQKV
GYSIRFDDTTSASTRIKYLTDGLLLREALLDPLLSRYSVVVVDEAHERTVHTDVLLGLLK
DVQKARSLERRKDTNGVTLKEENNVQNRVSLKPCEGSKISPLKLIIMSASLDARGFSEYF
GGARAVHIQGRQYPVDILYTHNAEPDYVDAALITIFQIHMSEGPGDILVFLTGQEEIESV
EKLIQERVQKLPKTSQTLKVVPIFSSLPSEKQMLVFQTAPPGFQKVILATNIAETSVTIP
GIKYVIDPGLVKARSYNHRTGMESLIITPISKAQALQRSGRAGREGPGKCFRLYQESEFA
KLADSTTPEIKRCNLSNVILQLKALGVDDIMGFDFMEKPSRTAIANSLEQLLLLGALTDD
YKLSDPVGSQMARLPLDPIYSKALIVASEFRCLEEMLIAVSMLSVESMFYTPRDKMQEAR
DARKCFTSVDGDHLTLVSVYRASAECLEKSRLAGSKEKKAEKTLNKWCRDNFINSRSLKH
ARDIHSQIRGHVEQMGLHISSCGDDMLQFRRCLAASFFLNAALKQHDGSYRALASSQTVQ
IHPSSVLFRAKPECIVYNELIRTNHNYIRNITRIDPLWLPELAPQYYASQN
NT seq 2136 nt   +upstreamnt  +downstreamnt
atggcgactgaagtaccgaagaattcagaaggaacacctaaatggaaaaataatcactca
catagtaacggaaatcttcctcagaatatgcggaggcaaattatatcgcaacagaggaaa
tcattacctattgcttcagttgagaagcgacttctggaagaagtgagaaagcatgatata
ctgatcattgttggggaaactggtagtgggaaaacaactcagttaccacagtttttatgt
aacgggggattctgtcgtgatggtaaagtaattgggatcactcaaccacggcgtgttgcg
gctgtcactgttgcgaaacgtgtggcggaggagtgtgatgtggagttgggccagaaggtt
gggtattccattagatttgatgatacaacatctgcctcgacgaggattaaatacttgact
gatggattactgttaagggaagcactgctggatccgcttctttctaggtattctgttgtc
gttgtcgatgaggctcatgagagaactgttcatactgatgtgctattaggcttgttaaaa
gatgtacaaaaagcaaggtcactggaacgcagaaaggataccaacggtgtcacacttaag
gaagaaaataacgtgcagaatcgtgtttccctgaaaccgtgcgagggctcaaaaatttca
ccacttaaattgatcattatgtctgctagtttagatgcaagaggtttctctgagtatttt
gggggagcaagagctgttcacattcaagggagacagtacccggtagatatactctacact
cataatgctgagccagattatgtagatgcagcattgattactatctttcagattcatatg
agcgagggtcccggtgatatacttgtatttcttacggggcaagaagaaatagaatcggtg
gaaaaacttatccaagagagagtgcaaaaattacctaaaaccagccaaactctaaaagtt
gtaccaatattttcatctcttccgtcagaaaaacaaatgctagttttccagacagctccg
cctgggtttcaaaaggtcatattggcaacaaatattgctgagacatcagtgacaattcct
ggaatcaagtatgttattgatccaggattagttaaagcgcgttcttacaaccatcgcaca
gggatggagtcactaattattactcctatatcgaaagcacaggctcttcaaaggagtggt
cgtgcagggcgtgaaggaccggggaaatgctttaggttatatcaagaaagcgagtttgct
aaacttgctgattcaactacgcctgagattaagcggtgcaacctgtctaatgttatacta
cagctcaaggctttaggtgttgatgatattatggggtttgatttcatggaaaagccatcc
aggacggccattgcgaactctttggagcagttgttgttgctaggggctctgacagatgat
tataaactttctgatccggttgggagtcaaatggctcggttgcctttggaccctatttat
tctaaagctctcattgttgcaagcgaatttaggtgcttggaggaaatgttgatagctgtt
tcaatgctttcagtggagtccatgttttatactcctcgtgacaagatgcaagaggcacga
gatgcacgaaagtgttttactagtgtagatggggaccatctcaccttggtgagtgtatat
cgtgcttctgctgagtgcttggagaagagcagattggcaggcagtaaagagaagaaagct
gaaaaaaccctcaacaagtggtgcagagacaactttatcaatagtcgttcccttaaacat
gccagagacattcatagtcaaattcgaggacacgttgaacagatgggtctgcatatttct
tcatgtggagatgacatgttacaatttcgaagatgtcttgctgcttcttttttccttaat
gcagctctgaagcagcatgatgggtcatacagggctttggcaagtagtcaaactgttcag
atccatccctcttctgtgttattccgggcaaaaccagaatgtatagtatataatgaactg
attcgaacaaatcacaattacatccgcaacataactagaatcgatccgctgtggttacct
gaattggctcctcagtattatgcatctcaaaactag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (16)   
   Pfam (16)   
All databases (26)   

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