KEGG   Pyrus x bretschneideri (Chinese white pear): 103946019
Entry
103946019         CDS       T03446                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like isoform X1
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
Organism
pxb  Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pxb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103946019
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pxb03041]
    103946019
   03009 Ribosome biogenesis [BR:pxb03009]
    103946019
Enzymes [BR:pxb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     103946019
Spliceosome [BR:pxb03041]
 Complex A
  U1 snRNP components
   U1 related factors
    103946019
 Complex B
    103946019
Ribosome biogenesis [BR:pxb03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    103946019
SSDB
Motif
Pfam: DEAD Helicase_C ResIII SNF2-rel_dom AAA_22 PRAI
Other DBs
NCBI-GeneID: 103946019
NCBI-ProteinID: XP_009354913
Position
Unknown
AA seq 574 aa
MSYVPPHLRSSSRTTTTITTTTAAEASSRTLDDQSKLSYSSSNSHFSNDKSSSGGASSSS
FSHSNASSRWSSGALSQASRARPDSVVPQWKPSDRVFRMNPEMIEEVCLRLNLDVSVSSD
SAPAPAPIESFTDMCLHPSIMKDIDNHGYTTPTSIQAQAMPIALSGRDLLGCAETGSGKT
AAFAIPMIQHCLAQPPVQRGDGPLALVLAPTRELAQQIEKEVKSFGASLESFRTAIVVGG
TNISEQRSELRAGVDVVVATPGRFIDHLQQGNTSITRISFVVLDEADRMLDMGFEPQIRE
VMRNLSEKHQTLLFSATMPEEIEELAQEYLTKPVQVKVGKVSSPTANVTQTLEKVPESEK
TDQLLALLVEEASRVEGTGHPFPLTIVFVERKTRCDEVAEALAAQGLHAVTLHGGRTQTE
REAALRDFRKGTTSILVATDVASRGLDVSGVAHVINLDLPKSMEDYVHRIGRTGRAGSMG
QSTSFYTDRDMFLVANIKKAISDAGSGNAVAFATGKTARRKEKEAAAAQKQARVALSKSS
IAGPTSVNIEDKYRFMFADSHNKKEGAADGAWDD
NT seq 1725 nt   +upstreamnt  +downstreamnt
atgtcgtatgtgcctccgcacctgaggtcgagctcaagaaccaccacgacaatcaccact
accaccgccgccgaagcctcgtctcgaaccctagacgatcagagcaagctctcctactcc
tcctccaactctcacttcagcaacgacaagtcgtcgtccggtggtgcttcctcctccagc
ttctctcactccaatgcctcctctcgctggagctccggcgctctctcccaggccagcaga
gctcgcccggactccgtcgtccctcagtggaagccctccgaccgcgtcttccgcatgaat
cctgaaatgatcgaagaggtttgtttgcggcttaatttggatgtttctgttagttccgac
tctgctcctgctccggcaccgatcgagtcttttacagatatgtgtttgcaccctagcatc
atgaaggatatcgacaatcacggatacaccacaccgacatccattcaggctcaagctatg
ccgattgctctcagtgggagggacttattaggttgtgctgaaactggcagtggaaaaact
gctgcattcgccattcccatgatacagcattgcttggctcaacctcctgttcagcgtggt
gatggaccactagctctcgtattggctccgactagagagcttgcccaacaaattgaaaaa
gaggtcaaatcgtttggtgcatctctcgagtccttcagaactgctattgtggtgggtgga
accaacatatctgagcagaggtctgagctacgagcaggagttgatgtagtggttgctact
cctggaagatttatagatcatttacaacaagggaacacttctatcactagaatttcgttt
gttgttttagatgaagctgatagaatgcttgacatgggatttgaaccacagataagagag
gtgatgcggaacctttctgaaaagcatcaaactttgctgtttagtgcaactatgcctgaa
gagatcgaagaattagctcaggaatacttgactaaaccagtgcaagtgaaggtgggaaaa
gtgagtagccctacagcaaatgtgactcagactttggagaaggttcctgagagtgagaag
actgatcagctattggctttgctcgtagaagaggcatctcgggttgaaggaactggccat
ccctttcccttaacaattgtgtttgttgaaaggaagacgagatgtgacgaagttgctgaa
gctttggcagcacaaggcttgcatgcagttactcttcatggtggtcgtacacaaactgaa
agagaggctgctctacgtgattttagaaaaggcactaccagtattttggttgccactgat
gttgcgtctcgcggtttggatgtctcaggagttgcacatgttatcaatttggatcttcca
aagagcatggaagattatgtacaccgaattggaaggacgggaagagcaggatcaatggga
caatctacttccttttacacggatcgtgatatgttccttgtggcaaatataaagaaagca
atatcagatgctggatctgggaatgctgtggcttttgcaactgggaagactgcaagaagg
aaagaaaaagaagcagcagctgctcaaaagcaagctagggttgctttatccaaaagctca
atagcgggaccaacatcagtaaacattgaggacaagtatcggttcatgtttgcagattca
cacaataaaaaagaaggggcagcagatggtgcttgggacgattga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (20)   

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