KEGG   Phenylobacterium zucineum: PHZ_p0043
Entry
PHZ_p0043         CDS       T00750                                 
Name
(GenBank) ATP dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pzu  Phenylobacterium zucineum
Pathway
pzu03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pzu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PHZ_p0043
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pzu03400]
    PHZ_p0043
Enzymes [BR:pzu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PHZ_p0043
DNA repair and recombination proteins [BR:pzu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PHZ_p0043
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: ACG79986
UniProt: B4RI11
Position
unnamed:complement(47604..48614)
AA seq 336 aa
MTVVATARDRPVDGSWTGSGPPIFIPFQHPRLVRAPPSGPDWLHEVKLDGDRFQARVLQG
EVRWRSRNGVDRSALLPDLSARLADLPDCILDGELCALDRAERPNFSLLRARLGARQRHA
ARDPLVFFAFDLLHLNREALLRRPLAARHEALGRLLRRAPLDGPIRSAAAITDPDPLGWA
RREGFEGVVSKRLDSPYAPGERNDSWRKSKWRPSQEVVIGGWAMTGSRKFRSLLVGVYDD
GVLRYVGRVHTGYPRRVMPELLARLRAVRSETCPFEAGDPPRKDPAVQWTRPVLVANIDF
AEWTEHGRIRQASFKGLRSGKSPQDVVAEISESPAE
NT seq 1011 nt   +upstreamnt  +downstreamnt
gtgactgtcgtggccacggcgcgtgacaggcccgtcgacggatcttggaccggatccggg
ccgccgatcttcatccccttccagcatccgcggctcgtccgcgcgccgccgtcaggtccg
gattggcttcatgaggtcaagcttgatggcgaccgcttccaggcccgagtcctgcagggc
gaggtccggtggcgtagtcgaaacggcgtcgaccgatcggctctgcttcctgatctcagc
gcgcggctcgccgacttgcccgactgcatcttggacggcgagctctgcgcgctcgaccga
gcggaacggccgaacttcagcctcctccgggcgcgactaggggcgcgtcagcgccacgcg
gcccgcgatccgctggtcttcttcgccttcgatttgctgcacctgaaccgcgaggcgctg
ctgcggcgaccgctcgccgcccgacacgaggcgctcgggcgcctcttgcggcgggcgccg
cttgatgggccgatccggtcggcggccgcgatcaccgacccggatcccctcggctgggcg
aggcgcgagggattcgaaggcgtggtctccaaacggctcgattctccctacgccccgggc
gaacggaacgacagctggcgcaagtcgaagtggcgcccgtcccaggaggtcgtgatcggc
ggctgggccatgaccggttcgcgcaagttccgatccctactggtcggggtctatgacgac
ggggtcctgcgctatgtcggacgcgtacacaccggctatccgcgccgggtgatgcccgag
ctgctcgcgcgactccgcgccgtgcgatccgagacctgtccgttcgaggccggcgatccg
ccgcgcaaggatccggccgttcagtggacccggccggtactggtggcgaacatcgacttc
gccgaatggactgagcatggccgcattcggcaggcaagcttcaagggcttgcggtcgggc
aagtccccgcaggacgtggtcgcagagatttccgagagcccagcagagtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (25)   

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