KEGG   Quercus suber (cork oak): 111986571
Entry
111986571         CDS       T05868                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
qsu  Quercus suber (cork oak)
Pathway
qsu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:qsu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111986571
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:qsu03041]
    111986571
Enzymes [BR:qsu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     111986571
Spliceosome [BR:qsu03041]
 Complex C
  Other components
   Step II factors
    111986571
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N DEAD AAA_22 AAA_19 nSTAND3 FtsK_SpoIIIE SLFN-g3_helicase AAA_30 ABC_tran Flavi_DEAD
Other DBs
NCBI-GeneID: 111986571
NCBI-ProteinID: XP_023874007
Position
Unknown
AA seq 722 aa
MPSMAQGGLRNSTENPNQLNRKFPNHEAKVDPFSRKQKIAQHRKSLPIASVEKRLVDEVR
KNDTLIIVGETGSGKTTQLPQFLFNAGFCRDGRTIGITQPRRVAAVTVAKRVAEECDVQL
GQRVGYSIRFDDMTSGSTRIKYMTDGLLLREALLDPYLSKYSVIIVDEAHERTVHTDVLL
GLLKNVQKARSKTSNDRLNIENKRTNDLTLLVKDNEDQTISFLKQCQGSKFPPLKLVIMS
ASLDALGFSEYFGGAKAVHIQGRQFPVDIFYTHYAEPDYLDAALITIFQIHLEEGPGDIL
VFLTGQEEIESVERLIKERLQQLPEGRQKLLTAPIFSALPSEKQMRVFAPAPTSFRKVIL
ATNIAETSVTIPGIKYVIDPGFVKARSYDPLKGMESLIIVPTSKSQALQRSGRAGREGPG
KCFRLYPEGEFEKLEDSTKPEIKRCNLSNVILQLKALGVDDILGFDFMEKPSRASIVKSL
EQLYLLGALTDECKLSNPVGHQMARFPLDPIYAKALILASQFNCLEEMLITVAMLSVESI
FYTPREKLEEARTATKCFSSPDGDHLTMINVYRASNEFLEKKTVGLSKEKSEKILRKWCK
DNFINSRSLRHARDIHGQIQGHVEQMGLCVASCGDDMLQFRRCLAASFFINAALKQPEGT
YRALASGQVVQIHPSSVLFQAKPECIIFNELVQTNHKYIRNITRIDYLWLSELAPQYYCM
QN
NT seq 2169 nt   +upstreamnt  +downstreamnt
atgccttcaatggcgcaaggaggtctcagaaactctacggaaaaccctaaccaactcaac
cgcaagttccccaaccacgaagccaaagttgaccccttttccaggaagcaaaagattgca
caacatagaaagtctcttccaatcgcttcggttgagaaaagactagttgatgaggtgaga
aagaatgatactttgattattgttggtgaaactggcagtggaaaaactacccagttgcca
cagtttctatttaacgcgggattttgtcgggatgggaggactattgggattactcaacct
agacgtgttgcagctgtgaccgttgccaaacgggttgctgaggaatgtgatgtgcagttg
gggcaaagagttgggtactccattagatttgatgatatgacttctggctcaactaggatc
aaatacatgactgatgggttgctattgagggaagcattattggatccatatctctctaag
tattcggtgattattgttgatgaagcccatgagaggactgtccatactgatgttttgctg
ggcttgcttaaaaatgtgcaaaaagcaaggtcaaaaacttccaatgaccgccttaatatt
gaaaacaagaggacaaatgatctcactttgctggttaaagataatgaagatcagaccatt
agttttctcaagcagtgccaaggcagcaaattccctccattaaagttagtcatcatgtct
gccagcttggatgcacttggtttctctgagtactttggcggtgcaaaagctgttcatatc
cagggtcgacaatttcctgtggatattttttacactcattatgctgagccagattattta
gatgcagccttaatcaccatattccagattcatctggaggagggccctggtgacatactt
gtatttttgactgggcaagaagagattgaatctgttgaaagacttatcaaggaacgactt
caacaattacctgaaggtagacaaaagttgttaactgctcccatattttcggctcttcca
tcagaaaagcagatgcgagtttttgcaccagctccaaccagttttcgtaaggtaatatta
gcaacaaacattgctgagacatcagttacaatacctggaatcaagtatgttatagatcct
ggatttgtaaaagcacgctcctatgatccactcaaagggatggaatctttgattattgtt
ccaacgtctaaatctcaagctcttcaaaggagtggacgtgcagggcgtgaaggacctgga
aagtgctttcgtctctacccggagggtgaatttgagaaacttgaggattcaacaaagcct
gagatcaagcgatgcaacctctctaatgtcattttgcagctcaaggctctgggtgttgat
gatattcttgggtttgacttcatggagaaaccatcaagggcatctattgtcaaatcactg
gagcagttgtacttgctaggtgctttaacagatgagtgtaagctgtcaaatccagttggc
catcaaatggctcggttcccattagaccctatttatgccaaagctcttatcctggctagt
cagttcaactgcttggaagaaatgttgataactgttgccatgctttccgtggaatctatt
ttttacactcctcgtgagaagttagaagaggcaagaactgcaacaaaatgcttttcaagt
ccggatggagaccaccttactatgattaatgtatatcgtgcatcaaatgagttcttagag
aagaaaacggtagggcttagcaaggagaagagtgaaaaaattctgaggaagtggtgtaag
gataattttatcaacagtcgttctctaaggcatgctcgtgatattcacggtcaaattcaa
gggcatgttgaacaaatgggtctttgtgtggcttcttgtggagatgacatgcttcagttc
cgcagatgccttgctgcttcctttttcatcaatgcagctttgaagcagcctgagggaaca
tacagggctttggcaagcggtcaggtggtgcagatccacccttcttctgtgttattccag
gctaaaccagagtgtattattttcaatgaactagtccaaactaatcataaatacatccgc
aacataaccagaatcgattacttgtggttatctgagctggctcctcagtattattgcatg
cagaattaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (13)   
   Pfam (13)   
All databases (26)   

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