KEGG   Ruminococcus albus: Rumal_1735
Entry
Rumal_1735        CDS       T01387                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ral  Ruminococcus albus
Pathway
ral03030  DNA replication
ral03410  Base excision repair
ral03420  Nucleotide excision repair
ral03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ral00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Rumal_1735
   03410 Base excision repair
    Rumal_1735
   03420 Nucleotide excision repair
    Rumal_1735
   03430 Mismatch repair
    Rumal_1735
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ral03032]
    Rumal_1735
   03400 DNA repair and recombination proteins [BR:ral03400]
    Rumal_1735
Enzymes [BR:ral01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Rumal_1735
DNA replication proteins [BR:ral03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Rumal_1735
DNA repair and recombination proteins [BR:ral03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Rumal_1735
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Rumal_1735
   MMR (mismatch excision repair)
    DNA ligase
     Rumal_1735
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Rumal_1735
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT BRCT_2 RNA_ligase Auto_anti-p27 DNA_ligase_A_M RNA_pol_A_CTD
Other DBs
NCBI-ProteinID: ADU22233
UniProt: E6UIW7
Position
1989500..1991479
AA seq 659 aa
MSEKESAKKRIDELVEILNYHSRLYYVEDRNEISDYEYDMLQNELKKLEAANPDLIRKDS
PTQRVGGEAVSGFEKVTHKVQMGSLQDVFSFDEVREFVDRVRESVSDPVFVVEPKIDGLS
VSLEYHDGQLTVGSTRGDGFVGENVTENLKTVRSIPVTIDSSLPMIEVRGEVYMPRNVFL
SLIKEQEDNDEQPFKNPRNAAAGSLRQKDPKIAAKRKLDIFVFNVQQVDGKELTAHKQSL
DYLKELGFKTVPDYKQVSTSDEIIARINEIGESRFDLPYDIDGVVIKVDDFKHRDILGAT
AKVPKWAVAYKFPPEEKNTKLIDIELNVGRTGAVTPVAVFEPVFLAGTQVSRATLHNQDL
IIEKNINIGDTIRVRKAGDIIPEVLGSVEKNSEGAFMLPDECPVCHTKLVKSEDEAAVRC
PNVECPAQIFRSIVHFASKGAMNIDGLGPQIVRLLLDNKLITSVADLYNIKEDDLLALDS
FKEKSAHNLVTAIEKSRSVSLDRLIFGLGIRNIGQASAKLLCAKFGGLDSIMSATAEEIS
GIDGFGVVMAQSVYNAFHEEHMIALIQRLKECGVNTEYEKVQQDDRFAGKTFVLTGTLPT
LKRNDAKELIEKFGGKASGSVSKKTDFVLAGEEAGSKLTKAQELGVKIISEEEFMEMIK
NT seq 1980 nt   +upstreamnt  +downstreamnt
atgtctgaaaaggaaagcgcaaaaaaaaggatagatgagctggtcgaaatcctcaattat
cattcaaggctttattatgtggaagacaggaacgagatctccgattatgaatatgatatg
cttcagaatgagcttaaaaagcttgaagcggcaaaccctgaccttatacgcaaggacagc
cctactcagcgtgtaggcggtgaagctgtttctggctttgagaaagttacccataaagtt
cagatgggttctttgcaggacgttttttcctttgatgaggtacgagagttcgttgacagg
gtcagggagagtgtaagcgatcctgtattcgtagttgaacccaaaatagatggcctgtcc
gtttctctggaatatcatgacggtcagctgacagtaggttctactcgcggtgatggattt
gttggagagaacgtaactgaaaatctcaaaactgtacgctcgattcctgttacgatagac
agttcccttccgatgatagaagtccgcggcgaggtatatatgcctcgaaatgtttttcta
agtcttatcaaagagcaggaggataatgacgaacagccttttaaaaatcccagaaatgca
gcagcagggtcactaaggcagaaagatcctaagatagcggctaaacgcaagcttgatata
tttgtttttaatgtacagcaggtcgatggcaaggaacttactgcacacaagcaatcgttg
gattatctgaaagaactggggttcaagacggttcccgactacaaacaagtgagcacttct
gatgagataattgctcgtataaatgagataggggagagcagatttgatcttccttatgat
attgatggcgtcgttataaaagttgacgatttcaagcatcgtgatattctcggtgcaacg
gcaaaagttcctaaatgggcagttgcttataaatttcctccggaagagaagaacacaaaa
cttatcgatatagaactgaatgtcggaaggaccggcgcagttacacctgtcgctgtattt
gaacctgtttttctggcaggtactcaggtatcacgtgcgacgcttcataatcaggatctt
ataatagaaaaaaatataaatattggtgatacaataagggtacgcaaggcaggtgatatc
attcccgaagttttaggctcggtcgaaaagaattcagaaggtgctttcatgcttcccgat
gaatgtcctgtatgtcatacaaagcttgtaaagtccgaggatgaagcagctgtgcgttgt
cctaatgttgaatgccctgcacagatattccgcagtatagttcattttgcctcaaaggga
gctatgaacatcgacggattaggtccgcagatagttcgtttgctgcttgacaataaatta
ataacttctgtggcagacctttacaacatcaaggaagatgatcttttggctcttgacagt
ttcaaggaaaagtcagcacataatcttgttactgctattgaaaaatcaagatcggtctcc
cttgacagacttatattcggtctgggtataagaaacataggtcaggcttcagcaaagctt
ctttgtgctaaatttggcggacttgacagtataatgtcagcaacagccgaggaaatatcc
ggtatcgacggattcggtgtggtcatggcacagagcgtctataacgcttttcatgaggag
catatgatagctttgattcaacgtctaaaagaatgtggagtaaataccgaatatgaaaag
gtacagcaggatgaccgctttgcaggaaaaacttttgttctgacaggtactcttcccaca
ttaaaaagaaacgatgccaaggaactcatagaaaagttcggtggaaaggcaagcggttct
gtttcaaaaaagacagactttgttcttgcaggtgaggaagccggcagcaagcttacaaag
gcacaggaacttggcgttaagatcatttccgaagaagaattcatggagatgataaagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (123)   
   KEGG ORTHOLOGY (1)   
   RefGene (120)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (152)   

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